; matrix-scan -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/07/27/matrix-scan_2026-07-27.141134_b5NMM8.matrix -pseudo 1 -decimals 1 -2str -origin end -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -return pval -return rank -return normw -lth score 1 -uth pval 1e-3 -i $RSAT/public_html/tmp/www-data/2026/07/27/tmp_sequence_2026-07-27.141135_bEHMXV.fasta -seq_format fasta -n score ; Slow counting mode ; Input files ; input $RSAT/public_html/tmp/www-data/2026/07/27/tmp_sequence_2026-07-27.141135_bEHMXV.fasta ; Matrix files ; matrix 1 $RSAT/public_html/tmp/www-data/2026/07/27/matrix-scan_2026-07-27.141134_b5NMM8.matrix ; Sequence format fasta ; Pseudo counts 1 ; Background model ; Method input ; Markov order 1 ; Strand undef ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.33272 ; c 0.18385 ; g 0.16223 ; t 0.32119 ; Thresholds lower upper ; pval NA 0.001 ; score 1 NA ; Output columns ; 1 seq_id ; 2 ft_type ; 3 ft_name ; 4 strand ; 5 start ; 6 end ; 7 sequence ; 8 weight #seq_id ft_type ft_name strand start end sequence weight Pval ln_Pval sig normw rank rank_pm F6'H1 limit START_END D -1701 -1 . 0 0 0 0 F6'H1 site oligos_6-8nt_m4oligos_6-8nt_m4 D -1675 -1662 AGTCTCACGCTTCT 5.7 3.1e-04 -8.078 3.508 0.8326 1 1 F6'H1 site oligos_6-8nt_m4oligos_6-8nt_m4 R -1186 -1173 TGGTTCATGTCTAA 5.0 5.1e-04 -7.587 3.295 0.8167 2 2 F6'H1 site oligos_6-8nt_m4oligos_6-8nt_m4 R -707 -694 TAGTGCATGCAAGT 4.2 8.5e-04 -7.070 3.071 0.7986 3 3 F6'H1 site oligos_6-8nt_m4oligos_6-8nt_m4 D -1429 -1416 TGAGTCATGACCTT 3.9 1.0e-03 -6.887 2.991 0.7919 4 4 F6'H1 site oligos_6-8nt_m4oligos_6-8nt_m4 R -178 -165 CTCACCATGCTTAT 3.9 1.0e-03 -6.887 2.991 0.7919 5 5 AT3G12900 limit START_END D -1701 -1 . 0 0 0 0 AT3G12900 site oligos_6-8nt_m4oligos_6-8nt_m4 R -882 -869 TGAGCCATGCCCCT 7.8 6.2e-05 -9.685 4.206 0.8801 1 1 AT3G12900 site oligos_6-8nt_m4oligos_6-8nt_m4 R -614 -601 TGGTGCATGCGTCT 7.1 1.1e-04 -9.147 3.972 0.8643 2 2 AT3G12900 site oligos_6-8nt_m4oligos_6-8nt_m4 D -1537 -1524 TATTGCATGCAACT 6.6 1.6e-04 -8.757 3.803 0.8529 3 3 AT3G12900 site oligos_6-8nt_m4oligos_6-8nt_m4 R -1537 -1524 AGTTGCATGCAATA 6.4 1.8e-04 -8.610 3.739 0.8484 4 4 AT3G12900 site oligos_6-8nt_m4oligos_6-8nt_m4 D -614 -601 AGACGCATGCACCA 4.8 5.8e-04 -7.455 3.238 0.8122 5 5 AT3G12900 site oligos_6-8nt_m4oligos_6-8nt_m4 R -317 -304 TGCATAATGCCAAG 4.5 7.0e-04 -7.260 3.153 0.8054 6 6 AT3G12900 site oligos_6-8nt_m4oligos_6-8nt_m4 R -1547 -1534 AATAACAAGCCTAA 4.3 7.9e-04 -7.138 3.100 0.8009 7 7 AT3G12900 site oligos_6-8nt_m4oligos_6-8nt_m4 D -990 -977 TAGCTCACGACGTA 4.0 9.6e-04 -6.947 3.017 0.7941 8 8 CYP82C4 limit START_END D -1269 -1 . 0 0 0 0 CYP82C4 site oligos_6-8nt_m4oligos_6-8nt_m4 D -280 -267 TGTCTCATGCGTTC 9.4 1.4e-05 -11.157 4.845 0.9163 1 1 CYP82C4 site oligos_6-8nt_m4oligos_6-8nt_m4 D -1006 -993 NNNNNCATGCATAC 5.7 3.1e-04 -8.078 3.508 0.8326 2 2 CYP82C4 site oligos_6-8nt_m4oligos_6-8nt_m4 R -559 -546 AGATCCATGCATAA 5.6 3.3e-04 -8.014 3.480 0.8303 3 3 CYP82C4 site oligos_6-8nt_m4oligos_6-8nt_m4 R -1166 -1153 TGATTCATGCATGG 5.2 4.4e-04 -7.725 3.355 0.8213 4 4 CYP82C4 site oligos_6-8nt_m4oligos_6-8nt_m4 D -837 -824 TAGTACATGCAAGT 4.9 5.4e-04 -7.527 3.269 0.8145 5 5 CYP82C4 site oligos_6-8nt_m4oligos_6-8nt_m4 R -630 -617 TAGTTAATGCCTTA 4.0 9.6e-04 -6.947 3.017 0.7941 6 6 AT1G28680 limit START_END D -201 -1 . 0 0 0 0 AT1G28680 site oligos_6-8nt_m4oligos_6-8nt_m4 D -196 -183 AGACCCATACCATT 6.0 2.5e-04 -8.301 3.605 0.8394 1 1 ABCG37 limit START_END D -1701 -1 . 0 0 0 0 ABCG37 site oligos_6-8nt_m4oligos_6-8nt_m4 R -1058 -1045 TGACACAGGCCTCC 8.4 3.7e-05 -10.198 4.429 0.8937 1 1 ABCG37 site oligos_6-8nt_m4oligos_6-8nt_m4 R -326 -313 TAACACATGCTATC 6.6 1.6e-04 -8.757 3.803 0.8529 2 2 ABCG37 site oligos_6-8nt_m4oligos_6-8nt_m4 D -1051 -1038 TGTGTCATGCTGAT 5.1 4.7e-04 -7.663 3.328 0.8190 3 3 ABCG37 site oligos_6-8nt_m4oligos_6-8nt_m4 D -625 -612 GGTTTCATGCTGCG 5.0 5.1e-04 -7.587 3.295 0.8167 4 4 ABCG37 site oligos_6-8nt_m4oligos_6-8nt_m4 D -1489 -1476 TATCACATGCATGA 4.9 5.4e-04 -7.527 3.269 0.8145 5 5 ABCG37 site oligos_6-8nt_m4oligos_6-8nt_m4 R -1485 -1472 AACTTCATGCATGT 4.3 7.9e-04 -7.138 3.100 0.8009 6 6 COS1 limit START_END D -251 -1 . 0 0 0 0 RIBA1 limit START_END D -1307 -1 . 0 0 0 0 RIBA1 site oligos_6-8nt_m4oligos_6-8nt_m4 R -777 -764 TGACCCATGCAACA 8.1 4.9e-05 -9.932 4.313 0.8869 1 1 RIBA1 site oligos_6-8nt_m4oligos_6-8nt_m4 R -514 -501 GATCTCATGACTAT 4.9 5.4e-04 -7.527 3.269 0.8145 2 2 RIBA1 site oligos_6-8nt_m4oligos_6-8nt_m4 D -1109 -1096 AGATTCATGTCATG 4.8 5.8e-04 -7.455 3.238 0.8122 3 3 RIBA1 site oligos_6-8nt_m4oligos_6-8nt_m4 D -605 -592 TTCTTCATACCATA 4.1 9.0e-04 -7.014 3.046 0.7964 4 4 RIBC limit START_END D -278 -1 . 0 0 0 0 COS1 limit START_END D -251 -1 . 0 0 0 0 RIBA1 limit START_END D -1307 -1 . 0 0 0 0 RIBA1 site oligos_6-8nt_m4oligos_6-8nt_m4 R -777 -764 TGACCCATGCAACA 8.1 4.9e-05 -9.932 4.313 0.8869 1 1 RIBA1 site oligos_6-8nt_m4oligos_6-8nt_m4 R -777 -764 TGACCCATGCAACA 8.1 4.9e-05 -9.932 4.313 0.8869 2 2 RIBA1 site oligos_6-8nt_m4oligos_6-8nt_m4 R -514 -501 GATCTCATGACTAT 4.9 5.4e-04 -7.527 3.269 0.8145 3 3 RIBA1 site oligos_6-8nt_m4oligos_6-8nt_m4 R -514 -501 GATCTCATGACTAT 4.9 5.4e-04 -7.527 3.269 0.8145 4 4 RIBA1 site oligos_6-8nt_m4oligos_6-8nt_m4 D -1109 -1096 AGATTCATGTCATG 4.8 5.8e-04 -7.455 3.238 0.8122 5 5 RIBA1 site oligos_6-8nt_m4oligos_6-8nt_m4 D -1109 -1096 AGATTCATGTCATG 4.8 5.8e-04 -7.455 3.238 0.8122 6 6 RIBA1 site oligos_6-8nt_m4oligos_6-8nt_m4 D -605 -592 TTCTTCATACCATA 4.1 9.0e-04 -7.014 3.046 0.7964 7 7 RIBA1 site oligos_6-8nt_m4oligos_6-8nt_m4 D -605 -592 TTCTTCATACCATA 4.1 9.0e-04 -7.014 3.046 0.7964 8 8 RIBC limit START_END D -278 -1 . 0 0 0 0 ; ; Matrices ; matrix name ncol nrow pseudo Wmin Wmax Wrange ; 1 oligos_6-8nt_m4oligos_6-8nt_m4 14 4 1 -31.100 13.100 44.200 a:0.333 c:0.184 g:0.162 t:0.321 ; Number of sequences scanned 11 ; Sum of sequence lengths 10245 ; N residues 775 ; Matches per matrix ; matrix name matches scored ; 1 oligos_6-8nt_m4oligos_6-8nt_m4 34 20204 ; TOTAL 34 20204 ; Host name rsat ; Job started 2026-07-27.141135 ; Job done 2026-07-27.141137 ; Seconds 2.49 ; user 2.49 ; system 0.01 ; cuser 0.1 ; csystem 0.03