; matrix-scan  -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/07/27/matrix-scan_2026-07-27.095747_8vxdbe.matrix -pseudo 1 -decimals 1 -2str -origin end -offset -200 -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -return pval -return rank -lth score 1 -uth pval 1e-4 -i $RSAT/public_html/tmp/www-data/2026/07/27/tmp_sequence_2026-07-27.095747_6NGUHn.fasta -seq_format fasta -n score
; Slow counting mode            
; Input files
;	input	$RSAT/public_html/tmp/www-data/2026/07/27/tmp_sequence_2026-07-27.095747_6NGUHn.fasta
; Matrix files
;	matrix 1	$RSAT/public_html/tmp/www-data/2026/07/27/matrix-scan_2026-07-27.095747_8vxdbe.matrix
; Sequence format      	fasta
; Pseudo counts        	1
; Background model
;	Method        	input
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.34010
;		c	0.18996
;		g	0.15460
;		t	0.31534
; Thresholds	lower	upper
;	pval  	NA	0.0001
;	score 	1    	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight	Pval	ln_Pval	sig	rank	rank_pm
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	limit	START_END	D	-1501	199	.	0	0	0	0
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-1485	-1474	AACCATGCCTAG	8.4	5.4e-05	-9.820	4.265	1	1
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-1456	-1445	AACCATGCCTAG	8.4	5.4e-05	-9.820	4.265	2	2
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	limit	START_END	D	-1448	199	.	0	0	0	0
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-137	-126	AAGCATGCCATA	9.5	9.4e-06	-11.579	5.029	1	1
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-300	-289	AAACATGCCAGT	9.1	2.2e-05	-10.737	4.663	2	2
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	limit	START_END	D	-1501	199	.	0	0	0	0
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-295	-284	AAACATGCCAGT	9.1	2.2e-05	-10.737	4.663	1	1
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-137	-126	AAGCATGCCATC	8.6	4.5e-05	-10.013	4.348	2	2
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	limit	START_END	D	-1501	199	.	0	0	0	0
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	limit	START_END	D	-1459	199	.	0	0	0	0
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	limit	START_END	D	-1426	199	.	0	0	0	0
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	limit	START_END	D	-1501	199	.	0	0	0	0
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-18	-7	ATTCATGCCGGG	9.8	4.4e-06	-12.327	5.354	1	1
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	limit	START_END	D	-1501	199	.	0	0	0	0
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-430	-419	GGACATGCCGGA	8.5	4.9e-05	-9.916	4.307	1	1
107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182	limit	START_END	D	-1501	199	.	0	0	0	0
107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-490	-479	AAACATGCCAAG	8.4	5.4e-05	-9.820	4.265	1	1
107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648	limit	START_END	D	-1501	199	.	0	0	0	0
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	limit	START_END	D	-1501	199	.	0	0	0	0
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-42	-31	TGGCATGCCAAT	9.2	1.8e-05	-10.930	4.747	1	1
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-44	-33	TGGCATGCCATG	9.1	2.2e-05	-10.737	4.663	2	2
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	limit	START_END	D	-1501	199	.	0	0	0	0
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	limit	START_END	D	-773	199	.	0	0	0	0
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	limit	START_END	D	-233	199	.	0	0	0	0
Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0	limit	START_END	D	-1501	199	.	0	0	0	0
;
; Matrices
;	matrix	name                          	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6-8nt_m2oligos_6-8nt_m2	12	4	1	-26.600	10.600	37.200	a:0.340 c:0.190 g:0.155 t:0.315 
; Number of sequences scanned	15
; Sum of sequence lengths	23349
; N residues           	3647
; Matches per matrix
;	matrix	name                          	matches	scored
;	1	oligos_6-8nt_m2oligos_6-8nt_m2	11	46368
;		TOTAL          	11	46368
; Host name	rsat
; Job started	2026-07-27.095748
; Job done	2026-07-27.095751
; Seconds	3.91
;	user	3.91
;	system	0.03
;	cuser	0.12
;	csystem	0.01