; matrix-scan -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/07/27/matrix-scan_2026-07-27.095822_9b0LcL.matrix -pseudo 1 -decimals 1 -2str -origin end -offset -200 -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -return pval -return rank -lth score 1 -uth pval 1e-3 -i $RSAT/public_html/tmp/www-data/2026/07/27/tmp_sequence_2026-07-27.095822_C2DDTP.fasta -seq_format fasta -n score ; Slow counting mode ; Input files ; input $RSAT/public_html/tmp/www-data/2026/07/27/tmp_sequence_2026-07-27.095822_C2DDTP.fasta ; Matrix files ; matrix 1 $RSAT/public_html/tmp/www-data/2026/07/27/matrix-scan_2026-07-27.095822_9b0LcL.matrix ; Sequence format fasta ; Pseudo counts 1 ; Background model ; Method input ; Markov order 1 ; Strand undef ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.34010 ; c 0.18996 ; g 0.15460 ; t 0.31534 ; Thresholds lower upper ; pval NA 0.001 ; score 1 NA ; Output columns ; 1 seq_id ; 2 ft_type ; 3 ft_name ; 4 strand ; 5 start ; 6 end ; 7 sequence ; 8 weight #seq_id ft_type ft_name strand start end sequence weight Pval ln_Pval sig rank rank_pm AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1 limit START_END D -1501 199 . 0 0 0 0 AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1 site oligos_6-8nt_m2oligos_6-8nt_m2 D -1485 -1474 AACCATGCCTAG 8.4 5.4e-05 -9.820 4.265 1 1 AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1 site oligos_6-8nt_m2oligos_6-8nt_m2 D -1456 -1445 AACCATGCCTAG 8.4 5.4e-05 -9.820 4.265 2 2 AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1 site oligos_6-8nt_m2oligos_6-8nt_m2 R -507 -496 GTGCATGCAAGT 5.6 3.8e-04 -7.867 3.416 3 3 GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D limit START_END D -1448 199 . 0 0 0 0 GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D site oligos_6-8nt_m2oligos_6-8nt_m2 D -137 -126 AAGCATGCCATA 9.5 9.4e-06 -11.579 5.029 1 1 GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D site oligos_6-8nt_m2oligos_6-8nt_m2 D -300 -289 AAACATGCCAGT 9.1 2.2e-05 -10.737 4.663 2 2 GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D site oligos_6-8nt_m2oligos_6-8nt_m2 D -882 -871 GTCCATGCCTCT 7.2 1.3e-04 -8.985 3.902 3 3 GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D site oligos_6-8nt_m2oligos_6-8nt_m2 D -893 -882 AACCATGCATAG 4.7 8.1e-04 -7.114 3.090 4 4 GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D site oligos_6-8nt_m2oligos_6-8nt_m2 D -788 -777 GTGTACGCCTAT 4.6 8.7e-04 -7.045 3.059 5 5 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D limit START_END D -1501 199 . 0 0 0 0 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D site oligos_6-8nt_m2oligos_6-8nt_m2 D -295 -284 AAACATGCCAGT 9.1 2.2e-05 -10.737 4.663 1 1 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D site oligos_6-8nt_m2oligos_6-8nt_m2 D -137 -126 AAGCATGCCATC 8.6 4.5e-05 -10.013 4.348 2 2 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D site oligos_6-8nt_m2oligos_6-8nt_m2 D -890 -879 GTCCATGCCTCT 7.2 1.3e-04 -8.985 3.902 3 3 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D site oligos_6-8nt_m2oligos_6-8nt_m2 R -1061 -1050 TTCCACGCCTCA 5.5 4.2e-04 -7.777 3.378 4 4 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D site oligos_6-8nt_m2oligos_6-8nt_m2 R -956 -945 GACCAAGCCTAA 5.0 6.4e-04 -7.349 3.192 5 5 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D site oligos_6-8nt_m2oligos_6-8nt_m2 D -901 -890 AACCATGCATAG 4.7 8.1e-04 -7.114 3.090 6 6 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D site oligos_6-8nt_m2oligos_6-8nt_m2 D -796 -785 GTGTACGCCTAT 4.6 8.7e-04 -7.045 3.059 7 7 GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D limit START_END D -1501 199 . 0 0 0 0 GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D site oligos_6-8nt_m2oligos_6-8nt_m2 D -1247 -1236 AACCATGCCCAG 7.4 1.1e-04 -9.095 3.950 1 1 GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D site oligos_6-8nt_m2oligos_6-8nt_m2 D -1389 -1378 AGTTATGCCAGA 6.3 2.2e-04 -8.442 3.666 2 2 GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D site oligos_6-8nt_m2oligos_6-8nt_m2 D -592 -581 AACCAAGCCAAT 6.1 2.5e-04 -8.282 3.597 3 3 GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D site oligos_6-8nt_m2oligos_6-8nt_m2 R -1261 -1250 TGTTATGCCACT 5.6 3.8e-04 -7.867 3.416 4 4 GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D limit START_END D -1459 199 . 0 0 0 0 GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D site oligos_6-8nt_m2oligos_6-8nt_m2 D -991 -980 AACCATGCCCAG 7.4 1.1e-04 -9.095 3.950 1 1 GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D site oligos_6-8nt_m2oligos_6-8nt_m2 R -1005 -994 TGTTATGCCACG 5.7 3.6e-04 -7.942 3.449 2 2 GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D site oligos_6-8nt_m2oligos_6-8nt_m2 D -108 -97 TGTCATTCCTTT 5.2 5.4e-04 -7.521 3.266 3 3 A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA limit START_END D -1426 199 . 0 0 0 0 A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA site oligos_6-8nt_m2oligos_6-8nt_m2 D -108 -97 TGTCATTCCTTT 5.2 5.4e-04 -7.521 3.266 1 1 GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400 limit START_END D -1501 199 . 0 0 0 0 GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400 site oligos_6-8nt_m2oligos_6-8nt_m2 R -18 -7 ATTCATGCCGGG 9.8 4.4e-06 -12.327 5.354 1 1 GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400 site oligos_6-8nt_m2oligos_6-8nt_m2 D -262 -251 TTGCATGCCCCA 6.5 1.9e-04 -8.575 3.724 2 2 GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400 site oligos_6-8nt_m2oligos_6-8nt_m2 R -316 -305 ATTCATCCCATT 4.4 1.0e-03 -6.897 2.995 3 3 gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931 limit START_END D -1501 199 . 0 0 0 0 gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931 site oligos_6-8nt_m2oligos_6-8nt_m2 D -430 -419 GGACATGCCGGA 8.5 4.9e-05 -9.916 4.307 1 1 gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931 site oligos_6-8nt_m2oligos_6-8nt_m2 D -578 -567 NNNNNNGCCGTT 6.0 2.8e-04 -8.190 3.557 2 2 gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931 site oligos_6-8nt_m2oligos_6-8nt_m2 D -1028 -1017 ACTCATGCAGGG 5.3 4.9e-04 -7.612 3.306 3 3 107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182 limit START_END D -1501 199 . 0 0 0 0 107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182 site oligos_6-8nt_m2oligos_6-8nt_m2 D -490 -479 AAACATGCCAAG 8.4 5.4e-05 -9.820 4.265 1 1 107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182 site oligos_6-8nt_m2oligos_6-8nt_m2 R 105 116 TGACATTCCATG 4.6 8.7e-04 -7.045 3.059 2 2 107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648 limit START_END D -1501 199 . 0 0 0 0 107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648 site oligos_6-8nt_m2oligos_6-8nt_m2 D -435 -424 TGTCCTGCCTAA 6.1 2.5e-04 -8.282 3.597 1 1 107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648 site oligos_6-8nt_m2oligos_6-8nt_m2 R -132 -121 AATCATGCGGCA 5.7 3.6e-04 -7.942 3.449 2 2 107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648 site oligos_6-8nt_m2oligos_6-8nt_m2 D 8 19 ACCCATACCATT 4.7 8.1e-04 -7.114 3.090 3 3 107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648 site oligos_6-8nt_m2oligos_6-8nt_m2 R -49 -38 TTACATGCATTT 4.6 8.7e-04 -7.045 3.059 4 4 107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566 limit START_END D -1501 199 . 0 0 0 0 107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566 site oligos_6-8nt_m2oligos_6-8nt_m2 D -42 -31 TGGCATGCCAAT 9.2 1.8e-05 -10.930 4.747 1 1 107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566 site oligos_6-8nt_m2oligos_6-8nt_m2 R -44 -33 TGGCATGCCATG 9.1 2.2e-05 -10.737 4.663 2 2 107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566 site oligos_6-8nt_m2oligos_6-8nt_m2 R -1137 -1126 TCTCACGCCCAG 6.6 1.8e-04 -8.645 3.754 3 3 107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566 site oligos_6-8nt_m2oligos_6-8nt_m2 R -828 -817 GATCATGCATGT 5.7 3.6e-04 -7.942 3.449 4 4 107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566 site oligos_6-8nt_m2oligos_6-8nt_m2 R 139 150 CTCCATGCCCTT 5.6 3.8e-04 -7.867 3.416 5 5 107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566 site oligos_6-8nt_m2oligos_6-8nt_m2 D -546 -535 ATACATGCTAAT 4.5 9.4e-04 -6.964 3.025 6 6 107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566 site oligos_6-8nt_m2oligos_6-8nt_m2 R -119 -108 GTGCATGCACAT 4.5 9.4e-04 -6.964 3.025 7 7 107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566 site oligos_6-8nt_m2oligos_6-8nt_m2 D -830 -819 GTACATGCATGA 4.4 1.0e-03 -6.897 2.995 8 8 107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976 limit START_END D -1501 199 . 0 0 0 0 107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976 site oligos_6-8nt_m2oligos_6-8nt_m2 D -318 -307 TGTCATGCGCGT 6.9 1.5e-04 -8.825 3.833 1 1 107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976 site oligos_6-8nt_m2oligos_6-8nt_m2 R -314 -303 ATACACGCGCAT 4.8 7.5e-04 -7.194 3.124 2 2 107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976 site oligos_6-8nt_m2oligos_6-8nt_m2 R -987 -976 TTTCATTCCTTT 4.7 8.1e-04 -7.114 3.090 3 3 107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976 site oligos_6-8nt_m2oligos_6-8nt_m2 R -1292 -1281 ACTTATGCCACA 4.6 8.7e-04 -7.045 3.059 4 4 Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915 limit START_END D -773 199 . 0 0 0 0 Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915 site oligos_6-8nt_m2oligos_6-8nt_m2 D -19 -8 AATCATACCAGA 5.9 3.0e-04 -8.117 3.525 1 1 Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915 site oligos_6-8nt_m2oligos_6-8nt_m2 D -217 -206 ATGCATGCATGT 5.7 3.6e-04 -7.942 3.449 2 2 Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915 site oligos_6-8nt_m2oligos_6-8nt_m2 R -219 -208 ATGCATGCATTA 5.2 5.4e-04 -7.521 3.266 3 3 Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915 site oligos_6-8nt_m2oligos_6-8nt_m2 D -179 -168 AAGCATGCTAAT 4.8 7.5e-04 -7.194 3.124 4 4 PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000 limit START_END D -233 199 . 0 0 0 0 PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000 site oligos_6-8nt_m2oligos_6-8nt_m2 D 39 50 ATGCATGCATGT 5.7 3.6e-04 -7.942 3.449 1 1 PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000 site oligos_6-8nt_m2oligos_6-8nt_m2 R 37 48 ATGCATGCATTA 5.2 5.4e-04 -7.521 3.266 2 2 PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000 site oligos_6-8nt_m2oligos_6-8nt_m2 D 77 88 AAGCATGCTAAT 4.8 7.5e-04 -7.194 3.124 3 3 Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0 limit START_END D -1501 199 . 0 0 0 0 Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0 site oligos_6-8nt_m2oligos_6-8nt_m2 D -1273 -1262 GATCATGACATA 4.4 1.0e-03 -6.897 2.995 1 1 ; ; Matrices ; matrix name ncol nrow pseudo Wmin Wmax Wrange ; 1 oligos_6-8nt_m2oligos_6-8nt_m2 12 4 1 -26.600 10.600 37.200 a:0.340 c:0.190 g:0.155 t:0.315 ; Number of sequences scanned 15 ; Sum of sequence lengths 23349 ; N residues 3647 ; Matches per matrix ; matrix name matches scored ; 1 oligos_6-8nt_m2oligos_6-8nt_m2 55 46368 ; TOTAL 55 46368 ; Host name rsat ; Job started 2026-07-27.095823 ; Job done 2026-07-27.095827 ; Seconds 3.91 ; user 3.91 ; system 0.02 ; cuser 0.11 ; csystem 0.02