; matrix-scan  -v 1 -quick -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/07/27/matrix-scan_2026-07-27.113316_JwHeNr.matrix -pseudo 1 -decimals 1 -2str -origin end -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -lth score 4 -i $RSAT/public_html/tmp/www-data/2026/07/27/tmp_sequence_2026-07-27.113316_G9xdRE.fasta -seq_format fasta -n score
; Quick counting mode           
; Input files
;	input	$RSAT/public_html/tmp/www-data/2026/07/27/tmp_sequence_2026-07-27.113316_G9xdRE.fasta
; Matrix files
;	matrix 1	$RSAT/public_html/tmp/www-data/2026/07/27/matrix-scan_2026-07-27.113316_JwHeNr.matrix
; Sequence format      	fasta
; Pseudo counts        	1
; Background model
;	Method        	input
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.33310
;		c	0.18237
;		g	0.16015
;		t	0.32438
; Thresholds	lower	upper
;	score 	4    	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
F6'H1	limit	START_END	D	-1701	-1	.	0
AT3G12900	limit	START_END	D	-1701	-1	.	0
CYP82C4	limit	START_END	D	-1269	-1	.	0
AT1G28680	limit	START_END	D	-201	-1	.	0
ABCG37	limit	START_END	D	-1701	-1	.	0
COS1	limit	START_END	D	-251	-1	.	0
RIBA1	limit	START_END	D	-1307	-1	.	0
RIBC	limit	START_END	D	-278	-1	.	0
F6'H1	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-1685	-1674	AACCATGCCTAG	8.8
F6'H1	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-1656	-1645	AACCATGCCTAG	8.8
F6'H1	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-707	-696	GTGCATGCAAGT	5.3
F6'H1	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-705	-694	TTGCATGCACTA	4.2
AT3G12900	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-1547	-1536	TAACAAGCCTAA	5.8
AT3G12900	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-1537	-1526	TTGCATGCAATA	5.1
AT3G12900	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-1535	-1524	TTGCATGCAACT	4.5
AT3G12900	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-882	-871	AGCCATGCCCCT	7.8
AT3G12900	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-614	-603	GTGCATGCGTCT	4.8
AT3G12900	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-31	-20	TTTCACGCCGTT	8.6
AT3G12900	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-22	-11	TATCATTCCTTT	5.4
CYP82C4	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-1166	-1155	ATTCATGCATGG	5.2
CYP82C4	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-919	-908	ATTCATGCGGTA	6.6
CYP82C4	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-897	-886	AAGCACGCAGGA	4.4
CYP82C4	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-835	-824	GTACATGCAAGT	5.1
CYP82C4	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-780	-769	GGACCTGCCTTG	5.4
CYP82C4	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-559	-548	ATCCATGCATAA	4.3
CYP82C4	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-346	-335	ATGCATGCACGA	4.6
CYP82C4	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-344	-333	GTGCATGCATTA	4.5
CYP82C4	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-278	-267	TCTCATGCGTTC	4.4
AT1G28680	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-194	-183	ACCCATACCATT	5.1
ABCG37	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-1049	-1038	TGTCATGCTGAT	4.3
ABCG37	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-867	-856	TCTCATACCAAT	5.3
ABCG37	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-111	-100	AGCCAAGCCATG	6.6
RIBA1	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-1107	-1096	ATTCATGTCATG	4.0
RIBA1	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-721	-710	TGACATACCAAC	4.1
;
; Matrices
;	matrix	name                          	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6-8nt_m2oligos_6-8nt_m2	12	4	0	-26.400	10.600	37.000	a:0.333 c:0.182 g:0.160 t:0.324 
; Number of sequences scanned	8
; Sum of sequence lengths	8409
; N residues           	653
; Matches per matrix
;	matrix	name                          	matches	scored
;	1	oligos_6-8nt_m2oligos_6-8nt_m2	26	0
;		TOTAL          	26	0
; Host name	rsat
; Job started	2026-07-27.113317
; Job done	2026-07-27.113317
; Seconds	0.16
;	user	0.16
;	system	0.02
;	cuser	0.1
;	csystem	0.03