; matrix-scan -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/07/27/matrix-scan_2026-07-27.133657_tqrTe3.matrix -pseudo 1 -decimals 1 -2str -origin end -offset -200 -bgfile $RSAT/public_html/data/genomes/Arabidopsis_thaliana.TAIR10.60/oligo-frequencies/2nt_upstream-noorf_Arabidopsis_thaliana.TAIR10.60-ovlp-1str.freq -bg_pseudo 0.01 -return limits -return sites -return pval -return rank -return normw -lth score 1 -uth pval 1e-1 -i $RSAT/public_html/tmp/www-data/2026/07/27/tmp_sequence_2026-07-27.133657_exz1u4.fasta -seq_format fasta -n score ; Slow counting mode ; Input files ; input $RSAT/public_html/tmp/www-data/2026/07/27/tmp_sequence_2026-07-27.133657_exz1u4.fasta ; bg $RSAT/public_html/data/genomes/Arabidopsis_thaliana.TAIR10.60/oligo-frequencies/2nt_upstream-noorf_Arabidopsis_thaliana.TAIR10.60-ovlp-1str.freq ; Matrix files ; matrix 1 $RSAT/public_html/tmp/www-data/2026/07/27/matrix-scan_2026-07-27.133657_tqrTe3.matrix ; Sequence format fasta ; Pseudo counts 1 ; Background model ; Method file ; Markov order 1 ; Strand sensitive ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.34589 ; c 0.15671 ; g 0.15366 ; t 0.34374 ; Thresholds lower upper ; pval NA 0.1 ; score 1 NA ; Output columns ; 1 seq_id ; 2 ft_type ; 3 ft_name ; 4 strand ; 5 start ; 6 end ; 7 sequence ; 8 weight #seq_id ft_type ft_name strand start end sequence weight Pval ln_Pval sig normw rank rank_pm AT2G44050|Arabidopsis_thaliana.TAIR10.60|COS1 limit START_END D -51 199 . 0 0 0 0 AT2G44050|Arabidopsis_thaliana.TAIR10.60|COS1 site oligos_6-8nt_m2oligos_6-8nt_m2 R 107 118 AGACACGGCGGC 2.9 2.3e-03 -6.079 2.640 0.7814 1 1 AT2G44050|Arabidopsis_thaliana.TAIR10.60|COS1 site oligos_6-8nt_m2oligos_6-8nt_m2 D 133 144 CGGCACACCGTC 2.6 2.6e-03 -5.935 2.577 0.7732 2 2 AT2G44050|Arabidopsis_thaliana.TAIR10.60|COS1 site oligos_6-8nt_m2oligos_6-8nt_m2 R 117 128 TATCAGGCGGAG 2.4 2.9e-03 -5.834 2.534 0.7678 3 3 AT2G44050|Arabidopsis_thaliana.TAIR10.60|COS1 site oligos_6-8nt_m2oligos_6-8nt_m2 R 167 178 TAACAGGCGGAG 1.4 4.8e-03 -5.341 2.320 0.7404 4 4 GSBRNA2T00101444001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g24640D limit START_END D -136 199 . 0 0 0 0 GSBRNA2T00101444001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g24640D site oligos_6-8nt_m2oligos_6-8nt_m2 D 79 90 CAACACGCCGTC 5.8 2.9e-04 -8.154 3.541 0.8607 1 1 GSBRNA2T00101444001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g24640D site oligos_6-8nt_m2oligos_6-8nt_m2 R 53 64 AGGCACGGCGGC 3.5 1.7e-03 -6.398 2.778 0.7978 2 2 GSBRNA2T00101444001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g24640D site oligos_6-8nt_m2oligos_6-8nt_m2 R -136 -125 TCGCCGGCCGGT 3.0 2.2e-03 -6.128 2.662 0.7842 3 3 GSBRNA2T00101444001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g24640D site oligos_6-8nt_m2oligos_6-8nt_m2 R 63 74 AGTCAGGCGGAG 2.8 2.4e-03 -6.031 2.619 0.7787 4 4 GSBRNA2T00101444001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g24640D site oligos_6-8nt_m2oligos_6-8nt_m2 D -80 -69 AACCAAACCAAT 2.5 2.8e-03 -5.881 2.554 0.7705 5 5 GSBRNA2T00101444001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g24640D site oligos_6-8nt_m2oligos_6-8nt_m2 D -100 -89 CGTCAAACCGGA 1.8 3.9e-03 -5.544 2.408 0.7514 6 6 GSBRNA2T00101444001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g24640D site oligos_6-8nt_m2oligos_6-8nt_m2 D 55 66 CGCCGTGCCTCC 1.6 4.3e-03 -5.443 2.364 0.7459 7 7 GSBRNA2T00101444001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g24640D site oligos_6-8nt_m2oligos_6-8nt_m2 D 111 122 TCTTCCGCCTGT 1.6 4.3e-03 -5.443 2.364 0.7459 8 8 GSBRNA2T00139024001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g20600D limit START_END D -184 199 . 0 0 0 0 GSBRNA2T00139024001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g20600D site oligos_6-8nt_m2oligos_6-8nt_m2 D 42 53 CAACACGCCGTC 5.8 2.9e-04 -8.154 3.541 0.8607 1 1 GSBRNA2T00139024001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g20600D site oligos_6-8nt_m2oligos_6-8nt_m2 R -178 -167 TCGCCGGCCGGT 3.0 2.2e-03 -6.128 2.662 0.7842 2 2 GSBRNA2T00139024001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g20600D site oligos_6-8nt_m2oligos_6-8nt_m2 R 16 27 AGACACGGCGGC 2.9 2.3e-03 -6.079 2.640 0.7814 3 3 GSBRNA2T00139024001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g20600D site oligos_6-8nt_m2oligos_6-8nt_m2 R 26 37 AGTCAGGCGGAG 2.8 2.4e-03 -6.031 2.619 0.7787 4 4 GSBRNA2T00139024001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g20600D site oligos_6-8nt_m2oligos_6-8nt_m2 D -121 -110 AACCAAACCAAT 2.5 2.8e-03 -5.881 2.554 0.7705 5 5 GSBRNA2T00139024001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g20600D site oligos_6-8nt_m2oligos_6-8nt_m2 D -180 -169 GTACCGGCCGGC 1.7 4.1e-03 -5.498 2.388 0.7486 6 6 GSBRNA2T00139024001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g20600D site oligos_6-8nt_m2oligos_6-8nt_m2 D 62 73 TCTTCCGCCTGT 1.6 4.3e-03 -5.443 2.364 0.7459 7 7 GSBRNA2T00139024001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g20600D site oligos_6-8nt_m2oligos_6-8nt_m2 D -142 -131 CATCAAACCGGA 1.4 4.8e-03 -5.341 2.320 0.7404 8 8 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 limit START_END D -1501 199 . 0 0 0 0 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 D -1084 -1073 TCTCATGNNNNN 5.5 3.8e-04 -7.874 3.420 0.8525 1 1 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 R -969 -958 TACCATGNNNNN 5.3 4.5e-04 -7.697 3.343 0.8470 2 2 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 R -1317 -1306 TGACATGCACGG 4.6 8.1e-04 -7.117 3.091 0.8279 3 3 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 R 140 151 GGTCATGCACAA 4.6 8.1e-04 -7.117 3.091 0.8279 4 4 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 R -415 -404 GTTCAAGCGGAT 3.9 1.3e-03 -6.634 2.881 0.8087 5 5 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 D -1315 -1304 GTGCATGTCAAG 3.8 1.4e-03 -6.570 2.853 0.8060 6 6 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 R -403 -392 GTACATCCCAGA 3.4 1.8e-03 -6.340 2.753 0.7951 7 7 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 R -887 -876 TATGATGCCCCT 3.3 1.8e-03 -6.293 2.733 0.7923 8 8 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 D -680 -669 TTTGATGCCTGA 3.3 1.8e-03 -6.293 2.733 0.7923 9 9 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 D 68 79 GTCGACGCCGTG 3.1 2.1e-03 -6.183 2.685 0.7869 10 10 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 D 117 128 TATCCTTCCTAG 3.0 2.2e-03 -6.128 2.662 0.7842 11 11 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 R 71 82 AGCCACGGCGTC 2.9 2.3e-03 -6.079 2.640 0.7814 12 12 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 D -320 -309 TTGCANNNNNNN 2.6 2.6e-03 -5.935 2.577 0.7732 13 13 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 R -296 -285 CATCATGCTNNN 2.6 2.6e-03 -5.935 2.577 0.7732 14 14 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 D 142 153 GTGCATGACCAA 2.5 2.8e-03 -5.881 2.554 0.7705 15 15 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 R -322 -311 NNNNNTGCAAGA 2.4 2.9e-03 -5.834 2.534 0.7678 16 16 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 R 76 87 CTTCCAGCCACG 2.4 2.9e-03 -5.834 2.534 0.7678 17 17 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 D -1267 -1256 CTTCCTGCGGTT 2.3 3.1e-03 -5.791 2.515 0.7650 18 18 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 D -1078 -1067 GNNNNNNNCGAG 2.3 3.1e-03 -5.791 2.515 0.7650 19 19 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 R -976 -965 NNNNNNNNCATT 2.3 3.1e-03 -5.791 2.515 0.7650 20 20 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 D -761 -750 ACACAAGCATAT 2.3 3.1e-03 -5.791 2.515 0.7650 21 21 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 R -1081 -1070 GNNNNNNNCATG 2.1 3.4e-03 -5.695 2.473 0.7596 22 22 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 D -972 -961 NNNNNNNNCATG 2.1 3.4e-03 -5.695 2.473 0.7596 23 23 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 R 90 101 AATGAAGCCATA 2.1 3.4e-03 -5.695 2.473 0.7596 24 24 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 R -174 -163 AGACNNNNNNNN 1.9 3.7e-03 -5.592 2.429 0.7541 25 25 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 R -668 -657 AATAAAGCCGAC 1.8 3.9e-03 -5.544 2.408 0.7514 26 26 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 R 163 174 NNNNNTACCACA 1.8 3.9e-03 -5.544 2.408 0.7514 27 27 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 D -806 -795 AACCNNNNNNNN 1.7 4.1e-03 -5.498 2.388 0.7486 28 28 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 R -1239 -1228 NNNNNNNNCAAA 1.5 4.5e-03 -5.398 2.344 0.7432 29 29 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 D -1125 -1114 ATTCATGAGAAT 1.3 5.0e-03 -5.292 2.298 0.7377 30 30 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 D -777 -766 NNNNNNNNCTAC 1.2 5.3e-03 -5.237 2.275 0.7350 31 31 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 R -611 -600 TTATATGCAAAT 1.2 5.3e-03 -5.237 2.275 0.7350 32 32 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 D -1077 -1066 NNNNNNNCGAGG 1.0 5.9e-03 -5.132 2.229 0.7295 33 33 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 D -43 -32 TATNNNNNNNNT 1.0 5.9e-03 -5.132 2.229 0.7295 34 34 gene-Lalb_Chr13g0292401|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0292401 limit START_END D -1501 199 . 0 0 0 0 gene-Lalb_Chr13g0292401|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0292401 site oligos_6-8nt_m2oligos_6-8nt_m2 R -2 9 TTGCAAGCCACT 6.3 1.8e-04 -8.607 3.738 0.8743 1 1 gene-Lalb_Chr13g0292401|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0292401 site oligos_6-8nt_m2oligos_6-8nt_m2 R -1193 -1182 TTCCATGTCAAG 3.2 2.0e-03 -6.236 2.708 0.7896 2 2 gene-Lalb_Chr13g0292401|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0292401 site oligos_6-8nt_m2oligos_6-8nt_m2 D -943 -932 NNNNNNNCCATC 3.2 2.0e-03 -6.236 2.708 0.7896 3 3 gene-Lalb_Chr13g0292401|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0292401 site oligos_6-8nt_m2oligos_6-8nt_m2 D -938 -927 NNCCATCCCTTT 2.9 2.3e-03 -6.079 2.640 0.7814 4 4 gene-Lalb_Chr13g0292401|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0292401 site oligos_6-8nt_m2oligos_6-8nt_m2 R 52 63 TTTCANNNNNNN 2.8 2.4e-03 -6.031 2.619 0.7787 5 5 gene-Lalb_Chr13g0292401|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0292401 site oligos_6-8nt_m2oligos_6-8nt_m2 D 86 97 TCTCAATCCATA 2.7 2.5e-03 -5.986 2.600 0.7760 6 6 gene-Lalb_Chr13g0292401|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0292401 site oligos_6-8nt_m2oligos_6-8nt_m2 D -920 -909 AATCNNNNNNNN 2.5 2.8e-03 -5.881 2.554 0.7705 7 7 gene-Lalb_Chr13g0292401|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0292401 site oligos_6-8nt_m2oligos_6-8nt_m2 D -322 -311 ATTCNNNNNNNN 2.4 2.9e-03 -5.834 2.534 0.7678 8 8 gene-Lalb_Chr13g0292401|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0292401 site oligos_6-8nt_m2oligos_6-8nt_m2 D -295 -284 NNNNNNNCCCTC 2.3 3.1e-03 -5.791 2.515 0.7650 9 9 gene-Lalb_Chr13g0292401|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0292401 site oligos_6-8nt_m2oligos_6-8nt_m2 D -1141 -1130 NNNNNTGCAGAA 2.1 3.4e-03 -5.695 2.473 0.7596 10 10 gene-Lalb_Chr13g0292401|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0292401 site oligos_6-8nt_m2oligos_6-8nt_m2 D -38 -27 NNNNNNNNCAAA 1.5 4.5e-03 -5.398 2.344 0.7432 11 11 gene-Lalb_Chr13g0292401|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0292401 site oligos_6-8nt_m2oligos_6-8nt_m2 D -944 -933 NNNNNNNNCCAT 1.4 4.8e-03 -5.341 2.320 0.7404 12 12 gene-Lalb_Chr13g0292401|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0292401 site oligos_6-8nt_m2oligos_6-8nt_m2 R -570 -559 TTACNNNNNNNN 1.3 5.0e-03 -5.292 2.298 0.7377 13 13 gene-Lalb_Chr13g0292401|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0292401 site oligos_6-8nt_m2oligos_6-8nt_m2 D -60 -49 TTACNNNNNNNN 1.3 5.0e-03 -5.292 2.298 0.7377 14 14 gene-Lalb_Chr13g0292401|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0292401 site oligos_6-8nt_m2oligos_6-8nt_m2 R 173 184 NNNNNCACCGGA 1.3 5.0e-03 -5.292 2.298 0.7377 15 15 gene-Lalb_Chr13g0292401|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0292401 site oligos_6-8nt_m2oligos_6-8nt_m2 R -1143 -1132 CTGCANNNNNNN 1.2 5.3e-03 -5.237 2.275 0.7350 16 16 gene-Lalb_Chr13g0292401|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0292401 site oligos_6-8nt_m2oligos_6-8nt_m2 D -1227 -1216 AGTNNNNNNNNN 1.1 5.6e-03 -5.180 2.250 0.7322 17 17 Prudul26B014047|Prunus_dulcis.ALMONDv2.60|Prudul26B014047 limit START_END D -143 199 . 0 0 0 0 Prudul26B014047|Prunus_dulcis.ALMONDv2.60|Prudul26B014047 site oligos_6-8nt_m2oligos_6-8nt_m2 D 162 173 ACTCATGCCTCC 7.9 7.5e-05 -9.498 4.125 0.9180 1 1 Prudul26B014047|Prunus_dulcis.ALMONDv2.60|Prudul26B014047 site oligos_6-8nt_m2oligos_6-8nt_m2 D -9 2 CGGCAAGCCTAT 5.7 3.2e-04 -8.061 3.501 0.8579 2 2 Prudul26B014047|Prunus_dulcis.ALMONDv2.60|Prudul26B014047 site oligos_6-8nt_m2oligos_6-8nt_m2 R -11 0 AGGCTTGCCGCT 5.3 4.5e-04 -7.697 3.343 0.8470 3 3 Prudul26B014047|Prunus_dulcis.ALMONDv2.60|Prudul26B014047 site oligos_6-8nt_m2oligos_6-8nt_m2 D -16 -5 AGGCAAGCGGCA 3.4 1.8e-03 -6.340 2.753 0.7951 4 4 Prudul26B014047|Prunus_dulcis.ALMONDv2.60|Prudul26B014047 site oligos_6-8nt_m2oligos_6-8nt_m2 D -120 -109 ATACAATCCAAT 2.7 2.5e-03 -5.986 2.600 0.7760 5 5 Prudul26B014047|Prunus_dulcis.ALMONDv2.60|Prudul26B014047 site oligos_6-8nt_m2oligos_6-8nt_m2 R -18 -7 CCGCTTGCCTAA 2.4 2.9e-03 -5.834 2.534 0.7678 6 6 Prudul26B014047|Prunus_dulcis.ALMONDv2.60|Prudul26B014047 site oligos_6-8nt_m2oligos_6-8nt_m2 R 3 14 TCAAATGCCTAC 1.9 3.7e-03 -5.592 2.429 0.7541 7 7 Prudul26B014047|Prunus_dulcis.ALMONDv2.60|Prudul26B014047 site oligos_6-8nt_m2oligos_6-8nt_m2 R -74 -63 TTTCAATCCTCT 1.8 3.9e-03 -5.544 2.408 0.7514 8 8 Prudul26B014047|Prunus_dulcis.ALMONDv2.60|Prudul26B014047 site oligos_6-8nt_m2oligos_6-8nt_m2 R -55 -44 GGTTATGCAAAA 1.4 4.8e-03 -5.341 2.320 0.7404 9 9 Prudul26B014047|Prunus_dulcis.ALMONDv2.60|Prudul26B014047 site oligos_6-8nt_m2oligos_6-8nt_m2 D 166 177 ATGCCTCCCACT 1.2 5.3e-03 -5.237 2.275 0.7350 10 10 PRUPE_7G270800|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_7G270800 limit START_END D -1 199 . 0 0 0 0 PRUPE_7G270800|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_7G270800 site oligos_6-8nt_m2oligos_6-8nt_m2 R 2 13 TGACATTCCTAT 4.8 7.0e-04 -7.269 3.157 0.8333 1 1 PRUPE_7G270800|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_7G270800 site oligos_6-8nt_m2oligos_6-8nt_m2 R 50 61 AGCCATTCCTAA 4.8 7.0e-04 -7.269 3.157 0.8333 2 2 PRUPE_7G270800|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_7G270800 site oligos_6-8nt_m2oligos_6-8nt_m2 D 170 181 AAGAATGCCCGC 3.2 2.0e-03 -6.236 2.708 0.7896 3 3 PRUPE_7G270800|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_7G270800 site oligos_6-8nt_m2oligos_6-8nt_m2 D 90 101 TAGCNNNNNNNN 2.3 3.1e-03 -5.791 2.515 0.7650 4 4 PRUPE_7G270800|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_7G270800 site oligos_6-8nt_m2oligos_6-8nt_m2 R 29 40 TGACAAGTCTAT 1.0 5.9e-03 -5.132 2.229 0.7295 5 5 Solyc08g015660.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc08g015660.ITAG4.0 limit START_END D -1501 199 . 0 0 0 0 Solyc08g015660.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc08g015660.ITAG4.0 site oligos_6-8nt_m2oligos_6-8nt_m2 D -492 -481 CTGCATGCCATC 7.2 1.0e-04 -9.169 3.982 0.8989 1 1 Solyc08g015660.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc08g015660.ITAG4.0 site oligos_6-8nt_m2oligos_6-8nt_m2 R -680 -669 TAGCATGCGCAT 6.2 2.0e-04 -8.507 3.694 0.8716 2 2 Solyc08g015660.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc08g015660.ITAG4.0 site oligos_6-8nt_m2oligos_6-8nt_m2 R -1390 -1379 AGTCATACCAAA 6.0 2.4e-04 -8.329 3.617 0.8661 3 3 Solyc08g015660.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc08g015660.ITAG4.0 site oligos_6-8nt_m2oligos_6-8nt_m2 R -1491 -1480 AAGTATGCCTAA 5.4 4.1e-04 -7.793 3.384 0.8497 4 4 Solyc08g015660.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc08g015660.ITAG4.0 site oligos_6-8nt_m2oligos_6-8nt_m2 R -494 -483 TGGCATGCAGTC 5.1 5.4e-04 -7.523 3.267 0.8415 5 5 Solyc08g015660.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc08g015660.ITAG4.0 site oligos_6-8nt_m2oligos_6-8nt_m2 D -678 -667 GCGCATGCTACA 3.6 1.6e-03 -6.459 2.805 0.8005 6 6 Solyc08g015660.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc08g015660.ITAG4.0 site oligos_6-8nt_m2oligos_6-8nt_m2 R 172 183 ACAAATGCCGTA 3.5 1.7e-03 -6.398 2.778 0.7978 7 7 Solyc08g015660.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc08g015660.ITAG4.0 site oligos_6-8nt_m2oligos_6-8nt_m2 R -289 -278 GAGCACCCCTGT 2.7 2.5e-03 -5.986 2.600 0.7760 8 8 Solyc08g015660.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc08g015660.ITAG4.0 site oligos_6-8nt_m2oligos_6-8nt_m2 R -1308 -1297 AGACAATCCACT 2.4 2.9e-03 -5.834 2.534 0.7678 9 9 Solyc08g015660.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc08g015660.ITAG4.0 site oligos_6-8nt_m2oligos_6-8nt_m2 R -351 -340 TGTTATACCTAT 2.3 3.1e-03 -5.791 2.515 0.7650 10 10 Solyc08g015660.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc08g015660.ITAG4.0 site oligos_6-8nt_m2oligos_6-8nt_m2 D -738 -727 ATTCAAACCCGC 2.0 3.5e-03 -5.647 2.453 0.7568 11 11 Solyc08g015660.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc08g015660.ITAG4.0 site oligos_6-8nt_m2oligos_6-8nt_m2 R -221 -210 NNNNNNNNCTAG 1.9 3.7e-03 -5.592 2.429 0.7541 12 12 Solyc08g015660.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc08g015660.ITAG4.0 site oligos_6-8nt_m2oligos_6-8nt_m2 D -1103 -1092 ACTTATTCCATA 1.8 3.9e-03 -5.544 2.408 0.7514 13 13 Solyc08g015660.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc08g015660.ITAG4.0 site oligos_6-8nt_m2oligos_6-8nt_m2 R -592 -581 TTTCATACAATT 1.7 4.1e-03 -5.498 2.388 0.7486 14 14 Solyc08g015660.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc08g015660.ITAG4.0 site oligos_6-8nt_m2oligos_6-8nt_m2 D 107 118 TTTCATACAATT 1.7 4.1e-03 -5.498 2.388 0.7486 15 15 Solyc08g015660.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc08g015660.ITAG4.0 site oligos_6-8nt_m2oligos_6-8nt_m2 D -602 -591 ATACATTCGAAA 1.6 4.3e-03 -5.443 2.364 0.7459 16 16 Solyc08g015660.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc08g015660.ITAG4.0 site oligos_6-8nt_m2oligos_6-8nt_m2 R 1 12 AGCCAACCCTAT 1.4 4.8e-03 -5.341 2.320 0.7404 17 17 Solyc08g015660.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc08g015660.ITAG4.0 site oligos_6-8nt_m2oligos_6-8nt_m2 R -927 -916 TATCACACGTTA 1.1 5.6e-03 -5.180 2.250 0.7322 18 18 Solyc08g015660.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc08g015660.ITAG4.0 site oligos_6-8nt_m2oligos_6-8nt_m2 R -1217 -1206 CGTCAAACCCTT 1.0 5.9e-03 -5.132 2.229 0.7295 19 19 ; ; Matrices ; matrix name ncol nrow pseudo Wmin Wmax Wrange ; 1 oligos_6-8nt_m2oligos_6-8nt_m2 12 4 1 -25.700 10.900 36.600 a:0.346 c:0.157 g:0.154 t:0.344 ; Number of sequences scanned 8 ; Sum of sequence lengths 6618 ; N residues 1277 ; Matches per matrix ; matrix name matches scored ; 1 oligos_6-8nt_m2oligos_6-8nt_m2 105 13060 ; TOTAL 105 13060 ; Host name rsat ; Job started 2026-07-27.133658 ; Job done 2026-07-27.133659 ; Seconds 1.46 ; user 1.46 ; system 0.03 ; cuser 0 ; csystem 0