; matrix-scan -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/07/28/matrix-scan_2026-07-28.161113_VOlldV.matrix -pseudo 1 -decimals 1 -2str -origin end -offset -200 -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -return pval -lth score 1 -uth pval 1e-4 -i $RSAT/public_html/tmp/www-data/2026/07/28/tmp_sequence_2026-07-28.161113_nFaouS.fasta -seq_format fasta -n score ; Slow counting mode ; Input files ; input $RSAT/public_html/tmp/www-data/2026/07/28/tmp_sequence_2026-07-28.161113_nFaouS.fasta ; Matrix files ; matrix 1 $RSAT/public_html/tmp/www-data/2026/07/28/matrix-scan_2026-07-28.161113_VOlldV.matrix ; Sequence format fasta ; Pseudo counts 1 ; Background model ; Method input ; Markov order 1 ; Strand undef ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.34464 ; c 0.18339 ; g 0.14842 ; t 0.32356 ; Thresholds lower upper ; pval NA 0.0001 ; score 1 NA ; Output columns ; 1 seq_id ; 2 ft_type ; 3 ft_name ; 4 strand ; 5 start ; 6 end ; 7 sequence ; 8 weight #seq_id ft_type ft_name strand start end sequence weight Pval ln_Pval sig BVRB_3g059400|Beta_vulgaris|Flavin_species|DMRL|ON|Beta_vulgaris.RefBeet-1.2.2.60; limit START_END D -255 199 . 0 0 0 0 BVRB_4g096340|Beta_vulgaris|Flavin_species|DMRL|ON|Beta_vulgaris.RefBeet-1.2.2.60; limit START_END D -1501 199 . 0 0 0 0 BVRB_4g096340|Beta_vulgaris|Flavin_species|DMRL|ON|Beta_vulgaris.RefBeet-1.2.2.60; site Kr R -1352 -1345 AACCCGTT 8.4 1.1e-05 -11.376 4.941 BVRB_4g096340|Beta_vulgaris|Flavin_species|DMRL|ON|Beta_vulgaris.RefBeet-1.2.2.60; site Med D -397 -392 CGGCTG 7.5 9.8e-05 -9.235 4.011 T459_03445|Capsicum_annuum|Flavin_species|DMRL|ON|Capsicum_annuum.ASM51225v2.60; limit START_END D -1501 199 . 0 0 0 0 T459_31204|Capsicum_annuum|Flavin_species|DMRL|ON|Capsicum_annuum.ASM51225v2.60; limit START_END D -1501 199 . 0 0 0 0 T459_31204|Capsicum_annuum|Flavin_species|DMRL|ON|Capsicum_annuum.ASM51225v2.60; site kni R 140 147 GATCGAGT 5.9 8.2e-05 -9.415 4.089 AUR62023693.v1.0|Chenopodium_quinoa|Flavin_species|DMRL|ON|Chenopodium_quinoa.PI614886.392.v1.JGI; limit START_END D -1501 199 . 0 0 0 0 AUR62023693.v1.0|Chenopodium_quinoa|Flavin_species|DMRL|ON|Chenopodium_quinoa.PI614886.392.v1.JGI; site kni D -1463 -1456 GATCTAGA 6.1 5.9e-05 -9.746 4.233 AUR62023693.v1.0|Chenopodium_quinoa|Flavin_species|DMRL|ON|Chenopodium_quinoa.PI614886.392.v1.JGI; site kni R -386 -379 GATCTAGA 6.1 5.9e-05 -9.746 4.233 AUR62023693.v1.0|Chenopodium_quinoa|Flavin_species|DMRL|ON|Chenopodium_quinoa.PI614886.392.v1.JGI; site eve R -103 -89 CGGATGATTCATGCC 9.0 1.5e-05 -11.081 4.812 AUR62023693.v1.0|Chenopodium_quinoa|Flavin_species|DMRL|ON|Chenopodium_quinoa.PI614886.392.v1.JGI; site Stat92E R -93 -85 TGCGCGGAT 7.2 8.2e-05 -9.406 4.085 AUR62023693.v1.0|Chenopodium_quinoa|Flavin_species|DMRL|ON|Chenopodium_quinoa.PI614886.392.v1.JGI; site eve R -67 -53 GGCATGCTTCGAGCC 7.5 6.8e-05 -9.589 4.165 AUR62023693.v1.0|Chenopodium_quinoa|Flavin_species|DMRL|ON|Chenopodium_quinoa.PI614886.392.v1.JGI; site eve R -55 -41 CGGAACATCAGCGGC 10.8 1.9e-06 -13.158 5.714 Cla97C08G153070|Citrullus_lanatus|Flavin_species|DMRL|ON|Citrullus_lanatus.Cla97_v1.62; limit START_END D -1501 199 . 0 0 0 0 Cla97C08G153070|Citrullus_lanatus|Flavin_species|DMRL|ON|Citrullus_lanatus.Cla97_v1.62; site Kr D 126 133 AACCCCTT 7.7 6.3e-05 -9.672 4.200 MELO3C011439.2|Cucumis_melo|Flavin_species|DMRL|ON|Cucumis_melo.Melonv4.60; limit START_END D -1501 199 . 0 0 0 0 Csa_6G366300|Cucumis_sativus|Flavin_species|DMRL|ON|Cucumis_sativus.ASM407v2.60; limit START_END D -1501 199 . 0 0 0 0 HanXRQr2_Chr13g0574171|Helianthus_annuus|Flavin_species|DMRL|ON|Helianthus_annuus.HanXRQr2.0-SUNRISE.60; limit START_END D -1501 199 . 0 0 0 0 HanXRQr2_Chr13g0574181|Helianthus_annuus|Flavin_species|DMRL|ON|Helianthus_annuus.HanXRQr2.0-SUNRISE.60; limit START_END D -1501 199 . 0 0 0 0 HanXRQr2_Chr13g0574181|Helianthus_annuus|Flavin_species|DMRL|ON|Helianthus_annuus.HanXRQr2.0-SUNRISE.60; site Med D 75 80 CGGCTG 7.5 9.8e-05 -9.235 4.011 gene-LSAT_8X33320|Lactuca_sativa|Flavin_species|DMRL|ON|Lactuca_sativa.Lsat_Salinas_v7.60; limit START_END D -1501 199 . 0 0 0 0 gene-LSAT_8X33320|Lactuca_sativa|Flavin_species|DMRL|ON|Lactuca_sativa.Lsat_Salinas_v7.60; site ttk D -961 -955 CAGGACC 8.7 1.9e-05 -10.877 4.724 gene-LSAT_8X33320|Lactuca_sativa|Flavin_species|DMRL|ON|Lactuca_sativa.Lsat_Salinas_v7.60; site kni R -718 -711 GATCTCGA 6.0 8.2e-05 -9.415 4.089 gene25542|Medicago_truncatula|Flavin_species|DMRL|ON|Medicago_truncatula.MtrunA17r50ANR.60; limit START_END D -1501 199 . 0 0 0 0 gene25542|Medicago_truncatula|Flavin_species|DMRL|ON|Medicago_truncatula.MtrunA17r50ANR.60; site Kr R -551 -544 AACCCTTT 7.9 4.4e-05 -10.027 4.355 gene25542|Medicago_truncatula|Flavin_species|DMRL|ON|Medicago_truncatula.MtrunA17r50ANR.60; site Kr D -334 -327 AACCCTTT 7.9 4.4e-05 -10.027 4.355 LOC107761937|Nicotiana_tabacum|Flavin_species|DMRL|ON|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2; limit START_END D -1501 199 . 0 0 0 0 LOC107761937|Nicotiana_tabacum|Flavin_species|DMRL|ON|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2; site Kr D -1490 -1483 AACCCGTT 8.4 1.1e-05 -11.376 4.941 LOC107761937|Nicotiana_tabacum|Flavin_species|DMRL|ON|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2; site Med D -1245 -1240 CGGCTG 7.5 9.8e-05 -9.235 4.011 LOC107761937|Nicotiana_tabacum|Flavin_species|DMRL|ON|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2; site kni R -1162 -1155 GATCTAGT 6.7 1.2e-05 -11.352 4.930 LOC107761937|Nicotiana_tabacum|Flavin_species|DMRL|ON|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2; site kni R -347 -340 GATCGCGT 6.0 8.2e-05 -9.415 4.089 LOC107761937|Nicotiana_tabacum|Flavin_species|DMRL|ON|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2; site prd R -106 -99 CACGCCAA 7.5 8.4e-05 -9.384 4.076 LOC107793142|Nicotiana_tabacum|Flavin_species|DMRL|ON|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2; limit START_END D -1501 199 . 0 0 0 0 LOC107793142|Nicotiana_tabacum|Flavin_species|DMRL|ON|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2; site Med D -911 -906 CGTCTG 8.1 6.6e-05 -9.633 4.184 LOC107793142|Nicotiana_tabacum|Flavin_species|DMRL|ON|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2; site gt D -297 -288 TTATGAGTCA 7.3 7.8e-05 -9.458 4.107 LOC107759548|Nicotiana_tabacum|Flavin_species|DMRL|ON|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2; limit START_END D -1501 199 . 0 0 0 0 LOC107759548|Nicotiana_tabacum|Flavin_species|DMRL|ON|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2; site prd D -1187 -1180 CGCGGGAC 7.7 5.3e-05 -9.843 4.275 LOC107759548|Nicotiana_tabacum|Flavin_species|DMRL|ON|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2; site ttk D -1180 -1174 CGGGACC 7.9 2.6e-05 -10.554 4.583 LOC107759548|Nicotiana_tabacum|Flavin_species|DMRL|ON|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2; site ttk D -1174 -1168 CGGGACC 7.9 2.6e-05 -10.554 4.583 LOC107759548|Nicotiana_tabacum|Flavin_species|DMRL|ON|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2; site hb R -511 -504 TTTTTATG 7.4 6.9e-05 -9.577 4.159 LOC107812499|Nicotiana_tabacum|Flavin_species|DMRL|ON|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2; limit START_END D -1501 199 . 0 0 0 0 LOC107812499|Nicotiana_tabacum|Flavin_species|DMRL|ON|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2; site Med D -976 -971 CGTCTG 8.1 6.6e-05 -9.633 4.184 LOC107812499|Nicotiana_tabacum|Flavin_species|DMRL|ON|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2; site gt D -763 -754 TTGTTACGTA 7.7 4.0e-05 -10.124 4.397 LOC107812499|Nicotiana_tabacum|Flavin_species|DMRL|ON|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2; site hb R -482 -475 TTTTTATG 7.4 6.9e-05 -9.577 4.159 LOC107812499|Nicotiana_tabacum|Flavin_species|DMRL|ON|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2; site prd R -90 -83 CACGCCAA 7.5 8.4e-05 -9.384 4.076 gene-LOC110794951|Spinacia_oleracea|Flavin_species|DMRL|ON|Spinacia_oleracea.GCF020520425.1.RefSeq; limit START_END D -1501 199 . 0 0 0 0 gene-LOC110794951|Spinacia_oleracea|Flavin_species|DMRL|ON|Spinacia_oleracea.GCF020520425.1.RefSeq; site eve R -227 -213 NNNNNNNNTAGCGGC 7.5 6.8e-05 -9.589 4.165 gene-LOC110794951|Spinacia_oleracea|Flavin_species|DMRL|ON|Spinacia_oleracea.GCF020520425.1.RefSeq; site eve R 60 74 CGCAACTTCAGCGGC 8.3 3.2e-05 -10.364 4.501 ; ; Matrices ; matrix name ncol nrow pseudo Wmin Wmax Wrange ; 1 Kr 8 4 1 -22.900 8.400 31.300 a:0.345 c:0.183 g:0.148 t:0.324 ; 2 Med 6 4 1 -14.400 8.000 22.400 a:0.345 c:0.183 g:0.148 t:0.324 ; 3 Stat92E 9 4 1 -12.500 11.300 23.800 a:0.345 c:0.183 g:0.148 t:0.324 ; 4 bcd 6 4 1 -17.700 6.400 24.100 a:0.345 c:0.183 g:0.148 t:0.324 ; 5 eve 15 4 1 -33.200 15.000 48.200 a:0.345 c:0.183 g:0.148 t:0.324 ; 6 gt 10 4 1 -22.000 8.700 30.700 a:0.345 c:0.183 g:0.148 t:0.324 ; 7 hb 8 4 1 -25.400 7.600 33.000 a:0.345 c:0.183 g:0.148 t:0.324 ; 8 kni 8 4 1 -12.600 6.400 19.000 a:0.345 c:0.183 g:0.148 t:0.324 ; 9 pan 8 4 1 -18.000 7.400 25.400 a:0.345 c:0.183 g:0.148 t:0.324 ; 10 prd 8 4 1 -18.500 9.000 27.500 a:0.345 c:0.183 g:0.148 t:0.324 ; 11 tin 6 4 1 -15.000 7.200 22.200 a:0.345 c:0.183 g:0.148 t:0.324 ; 12 ttk 7 4 1 -15.400 9.000 24.400 a:0.345 c:0.183 g:0.148 t:0.324 ; Number of sequences scanned 17 ; Sum of sequence lengths 27671 ; N residues 7120 ; Matches per matrix ; matrix name matches scored ; 1 Kr 5 55104 ; 2 Med 5 55172 ; 3 Stat92E 1 55070 ; 4 bcd 0 55172 ; 5 eve 5 54866 ; 6 gt 2 55036 ; 7 hb 2 55104 ; 8 kni 6 55104 ; 9 pan 0 55104 ; 10 prd 3 55104 ; 11 tin 0 55172 ; 12 ttk 3 55138 ; TOTAL 32 661146 ; Host name rsat ; Job started 2026-07-28.161113 ; Job done 2026-07-28.161155 ; Seconds 41.78 ; user 41.78 ; system 0.03 ; cuser 0.1 ; csystem 0.02