; matrix-scan -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/07/28/matrix-scan_2026-07-28.162955_wzEHj5.matrix -pseudo 1 -decimals 1 -2str -origin end -offset -200 -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -return pval -return normw -lth score 1 -uth pval 1e-4 -i $RSAT/public_html/tmp/www-data/2026/07/28/tmp_sequence_2026-07-28.162955_a4FJSF.fasta -seq_format fasta -n score ; Slow counting mode ; Input files ; input $RSAT/public_html/tmp/www-data/2026/07/28/tmp_sequence_2026-07-28.162955_a4FJSF.fasta ; Matrix files ; matrix 1 $RSAT/public_html/tmp/www-data/2026/07/28/matrix-scan_2026-07-28.162955_wzEHj5.matrix ; Sequence format fasta ; Pseudo counts 1 ; Background model ; Method input ; Markov order 1 ; Strand undef ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.33582 ; c 0.17850 ; g 0.14778 ; t 0.33790 ; Thresholds lower upper ; pval NA 0.0001 ; score 1 NA ; Output columns ; 1 seq_id ; 2 ft_type ; 3 ft_name ; 4 strand ; 5 start ; 6 end ; 7 sequence ; 8 weight #seq_id ft_type ft_name strand start end sequence weight Pval ln_Pval sig normw BVRB_3g059400|Beta_vulgaris|Flavin_species|DMRL|ON|Beta_vulgaris.RefBeet-1.2.2.60; limit START_END D -255 199 . 0 0 0 0 BVRB_4g096340|Beta_vulgaris|Flavin_species|DMRL|ON|Beta_vulgaris.RefBeet-1.2.2.60; limit START_END D -1501 199 . 0 0 0 0 BVRB_4g096340|Beta_vulgaris|Flavin_species|DMRL|ON|Beta_vulgaris.RefBeet-1.2.2.60; site Kr R -1352 -1345 AACCCGTT 8.5 9.9e-06 -11.524 5.005 1.0000 T459_03445|Capsicum_annuum|Flavin_species|DMRL|ON|Capsicum_annuum.ASM51225v2.60; limit START_END D -1501 199 . 0 0 0 0 T459_31204|Capsicum_annuum|Flavin_species|DMRL|ON|Capsicum_annuum.ASM51225v2.60; limit START_END D -1501 199 . 0 0 0 0 AUR62023693.v1.0|Chenopodium_quinoa|Flavin_species|DMRL|ON|Chenopodium_quinoa.PI614886.392.v1.JGI; limit START_END D -1501 199 . 0 0 0 0 Cla97C08G153070|Citrullus_lanatus|Flavin_species|DMRL|ON|Citrullus_lanatus.Cla97_v1.62; limit START_END D -1501 199 . 0 0 0 0 Cla97C08G153070|Citrullus_lanatus|Flavin_species|DMRL|ON|Citrullus_lanatus.Cla97_v1.62; site Kr D 126 133 AACCCCTT 7.7 6.9e-05 -9.577 4.159 0.9745 MELO3C011439.2|Cucumis_melo|Flavin_species|DMRL|ON|Cucumis_melo.Melonv4.60; limit START_END D -1501 199 . 0 0 0 0 Csa_6G366300|Cucumis_sativus|Flavin_species|DMRL|ON|Cucumis_sativus.ASM407v2.60; limit START_END D -1501 199 . 0 0 0 0 HanXRQr2_Chr13g0574171|Helianthus_annuus|Flavin_species|DMRL|ON|Helianthus_annuus.HanXRQr2.0-SUNRISE.60; limit START_END D -1501 199 . 0 0 0 0 HanXRQr2_Chr13g0574181|Helianthus_annuus|Flavin_species|DMRL|ON|Helianthus_annuus.HanXRQr2.0-SUNRISE.60; limit START_END D -1501 199 . 0 0 0 0 gene-LSAT_8X33320|Lactuca_sativa|Flavin_species|DMRL|ON|Lactuca_sativa.Lsat_Salinas_v7.60; limit START_END D -1501 199 . 0 0 0 0 gene25542|Medicago_truncatula|Flavin_species|DMRL|ON|Medicago_truncatula.MtrunA17r50ANR.60; limit START_END D -1501 199 . 0 0 0 0 gene25542|Medicago_truncatula|Flavin_species|DMRL|ON|Medicago_truncatula.MtrunA17r50ANR.60; site Kr R -551 -544 AACCCTTT 7.8 4.6e-05 -9.996 4.341 0.9777 gene25542|Medicago_truncatula|Flavin_species|DMRL|ON|Medicago_truncatula.MtrunA17r50ANR.60; site Kr D -334 -327 AACCCTTT 7.8 4.6e-05 -9.996 4.341 0.9777 LOC107761937|Nicotiana_tabacum|Flavin_species|DMRL|ON|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2; limit START_END D -1501 199 . 0 0 0 0 LOC107761937|Nicotiana_tabacum|Flavin_species|DMRL|ON|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2; site Kr D -1490 -1483 AACCCGTT 8.5 9.9e-06 -11.524 5.005 1.0000 LOC107793142|Nicotiana_tabacum|Flavin_species|DMRL|ON|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2; limit START_END D -1501 199 . 0 0 0 0 LOC107759548|Nicotiana_tabacum|Flavin_species|DMRL|ON|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2; limit START_END D -1501 199 . 0 0 0 0 LOC107812499|Nicotiana_tabacum|Flavin_species|DMRL|ON|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2; limit START_END D -1501 199 . 0 0 0 0 gene-LOC110794951|Spinacia_oleracea|Flavin_species|DMRL|ON|Spinacia_oleracea.GCF020520425.1.RefSeq; limit START_END D -1501 199 . 0 0 0 0 BVRB_9g215540|Beta_vulgaris|Flavin_species|RIBA|ON|Beta_vulgaris.RefBeet-1.2.2.60; limit START_END D -1501 199 . 0 0 0 0 BVRB_9g215540|Beta_vulgaris|Flavin_species|RIBA|ON|Beta_vulgaris.RefBeet-1.2.2.60; site Kr R -1443 -1436 AACCCGTT 8.5 9.9e-06 -11.524 5.005 1.0000 T459_35378|Capsicum_annuum|Flavin_species|RIBA|ON|Capsicum_annuum.ASM51225v2.60; limit START_END D -1501 199 . 0 0 0 0 T459_32000|Capsicum_annuum|Flavin_species|RIBA|ON|Capsicum_annuum.ASM51225v2.60; limit START_END D -1501 199 . 0 0 0 0 AUR62013165.v1.0|Chenopodium_quinoa|Flavin_species|RIBA|ON|Chenopodium_quinoa.PI614886.392.v1.JGI; limit START_END D -1501 199 . 0 0 0 0 Cla97C08G147910|Citrullus_lanatus|Flavin_species|RIBA|ON|Citrullus_lanatus.Cla97_v1.62; limit START_END D -250 199 . 0 0 0 0 Cla97C10G192540|Citrullus_lanatus|Flavin_species|RIBA|ON|Citrullus_lanatus.Cla97_v1.62; limit START_END D -1501 199 . 0 0 0 0 MELO3C024826.2|Cucumis_melo|Flavin_species|RIBA|ON|Cucumis_melo.Melonv4.60; limit START_END D -1501 199 . 0 0 0 0 MELO3C024826.2|Cucumis_melo|Flavin_species|RIBA|ON|Cucumis_melo.Melonv4.60; site Kr R -1450 -1443 AACCCTTT 7.8 4.6e-05 -9.996 4.341 0.9777 MELO3C024827.2|Cucumis_melo|Flavin_species|RIBA|ON|Cucumis_melo.Melonv4.60; limit START_END D -1501 199 . 0 0 0 0 MELO3C024827.2|Cucumis_melo|Flavin_species|RIBA|ON|Cucumis_melo.Melonv4.60; site Kr R -588 -581 AACCCGTT 8.5 9.9e-06 -11.524 5.005 1.0000 Csa_4G111580|Cucumis_sativus|Flavin_species|RIBA|ON|Cucumis_sativus.ASM407v2.60; limit START_END D -1501 199 . 0 0 0 0 Csa_4G111590|Cucumis_sativus|Flavin_species|RIBA|ON|Cucumis_sativus.ASM407v2.60; limit START_END D -1501 199 . 0 0 0 0 Csa_6G029440|Cucumis_sativus|Flavin_species|RIBA|ON|Cucumis_sativus.ASM407v2.60; limit START_END D -1501 199 . 0 0 0 0 HanXRQr2_Chr10g0444301|Helianthus_annuus|Flavin_species|RIBA|ON|Helianthus_annuus.HanXRQr2.0-SUNRISE.60; limit START_END D -1501 199 . 0 0 0 0 HanXRQr2_Chr16g0751271|Helianthus_annuus|Flavin_species|RIBA|ON|Helianthus_annuus.HanXRQr2.0-SUNRISE.60; limit START_END D -1501 199 . 0 0 0 0 gene-LSAT_5X108740|Lactuca_sativa|Flavin_species|RIBA|ON|Lactuca_sativa.Lsat_Salinas_v7.60; limit START_END D -1501 199 . 0 0 0 0 gene-LSAT_9X115140|Lactuca_sativa|Flavin_species|RIBA|ON|Lactuca_sativa.Lsat_Salinas_v7.60; limit START_END D -1501 199 . 0 0 0 0 gene7299|Medicago_truncatula|Flavin_species|RIBA|ON|Medicago_truncatula.MtrunA17r50ANR.60; limit START_END D -1501 199 . 0 0 0 0 LOC107780053|Nicotiana_tabacum|Flavin_species|RIBA|ON|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2; limit START_END D -1501 199 . 0 0 0 0 LOC107789601|Nicotiana_tabacum|Flavin_species|RIBA|ON|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2; limit START_END D -1501 199 . 0 0 0 0 gene-LOC110802506|Spinacia_oleracea|Flavin_species|RIBA|ON|Spinacia_oleracea.GCF020520425.1.RefSeq; limit START_END D -1501 199 . 0 0 0 0 ; ; Matrices ; matrix name ncol nrow pseudo Wmin Wmax Wrange ; 1 Kr 8 4 1 -22.900 8.500 31.400 a:0.336 c:0.178 g:0.148 t:0.338 ; Number of sequences scanned 36 ; Sum of sequence lengths 58739 ; N residues 13709 ; Matches per matrix ; matrix name matches scored ; 1 Kr 8 116974 ; TOTAL 8 116974 ; Host name rsat ; Job started 2026-07-28.162955 ; Job done 2026-07-28.163002 ; Seconds 7.07 ; user 7.07 ; system 0.02 ; cuser 0.11 ; csystem 0.01