/var/www/html/rsat/public_html/tmp/www-data/2026/07/28/peak-motifs.2026-07-28.110936_2026-07-28.110936_IaTuP0/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/07/28/peak-motifs.2026-07-28.110936_2026-07-28.110936_IaTuP0/data/sequences/peak-motifs_test_maxlen200_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title HSC_TA_vs_CT_top500 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/07/28/peak-motifs.2026-07-28.110936_2026-07-28.110936_IaTuP0/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/07/28/peak-motifs.2026-07-28.110936_2026-07-28.110936_IaTuP0/data/sequences/peak-motifs_test_maxlen200_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/07/28/peak-motifs.2026-07-28.110936_2026-07-28.110936_IaTuP0/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	541
	Sum of sequence lengths      	108200
	Min sequence length          	0
	Max sequence length          	200
	Average sequence length      	200
	Possible positions           	107659
 Oligonucleotide statistics:
	Total occurrences    	105770
 Position interval parameters:
	Position interval    	20
	Number of windows    	10
	Total positions      	107659
	Degrees of freedom   	9
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-5	[-99,-80]	-89.5	541	10820
	2	-4	[-79,-60]	-69.5	541	10820
	3	-3	[-59,-40]	-49.5	541	10820
	4	-2	[-39,-20]	-29.5	541	10820
	5	-1	[-19,0]	-9.5	541	10820
	6	0	[1,20]	10.5	541	10820
	7	1	[21,40]	30.5	541	10820
	8	2	[41,60]	50.5	541	10820
	9	3	[61,80]	70.5	541	10820
	10	4	[81,100]	90.5	541	10279

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-89.5          	occurrences in window	1	[-99,-80]
	11	-69.5          	occurrences in window	2	[-79,-60]
	12	-49.5          	occurrences in window	3	[-59,-40]
	13	-29.5          	occurrences in window	4	[-39,-20]
	14	-9.5           	occurrences in window	5	[-19,0]
	15	10.5           	occurrences in window	6	[1,20]
	16	30.5           	occurrences in window	7	[21,40]
	17	50.5           	occurrences in window	8	[41,60]
	18	70.5           	occurrences in window	9	[61,80]
	19	90.5           	occurrences in window	10	[81,100]
seq id occ chi2 df Pval Eval sig rank -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5
cc cc 12318 39.9 9 8.0e-06 0.00013 3.90 1 1373 1244 1275 1268 1234 1287 1185 1244 1162 1046
gg gg 12523 30.3 9 3.9e-04 0.0063 2.20 2 1235 1243 1205 1192 1253 1188 1293 1252 1337 1325
ga ga 6084 23.0 9 6.3e-03 0.1 1.00 3 581 639 597 555 640 661 639 546 623 603
tt tt 4154 19.9 9 1.9e-02 0.3 0.52 4 406 348 400 434 455 435 399 431 434 412
ta ta 2237 15.5 9 7.7e-02 1.2 -0.09 5 215 250 224 231 191 226 229 196 239 236
aa aa 4226 14.3 9 1.1e-01 1.8 -0.26 6 457 419 405 424 436 401 451 413 382 438
at at 2594 11.7 9 2.3e-01 3.7 -0.56 7 279 250 275 264 259 241 287 231 275 233
ac ac 4436 11.5 9 2.4e-01 3.9 -0.59 8 450 465 492 460 416 460 424 430 423 416
gc gc 11100 11.1 9 2.7e-01 4.3 -0.63 9 1128 1129 1137 1112 1080 1052 1083 1163 1104 1112
ca ca 6201 10.5 9 3.1e-01 5 -0.70 10 653 649 667 641 604 597 614 601 614 561
ag ag 7481 9.4 9 4.0e-01 6.5 -0.81 11 721 798 723 720 753 772 764 727 760 743
gt gt 4628 8.9 9 4.5e-01 7.1 -0.85 12 434 476 453 438 466 456 474 503 489 439
tg tg 6396 8.7 9 4.7e-01 7.5 -0.88 13 622 651 648 647 628 591 639 671 677 622
ct ct 7432 8.6 9 4.8e-01 7.6 -0.88 14 759 748 747 804 731 738 702 730 745 728
tc tc 6008 8.5 9 4.8e-01 7.8 -0.89 15 631 586 591 631 627 622 604 582 602 532
cg cg 7952 5.9 9 7.5e-01 12 -1.08 16 813 805 800 743 806 800 801 831 786 767 
 Host name	rsat
 Job started	2026-07-28.110940
 Job done	2026-07-28.110940
 Seconds	0.71
	user	0.71
	system	0
	cuser	0
;	csystem	0