/var/www/html/rsat/public_html/tmp/www-data/2026/07/28/peak-motifs.2026-07-28.142026_2026-07-28.142026_EMa4ET/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/07/28/peak-motifs.2026-07-28.142026_2026-07-28.142026_EMa4ET/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/07/28/peak-motifs.2026-07-28.142026_2026-07-28.142026_EMa4ET/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2026/07/28/peak-motifs.2026-07-28.142026_2026-07-28.142026_EMa4ET/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file2 	$RSAT/public_html/tmp/www-data/2026/07/28/peak-motifs.2026-07-28.142026_2026-07-28.142026_EMa4ET/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/07/28/peak-motifs.2026-07-28.142026_2026-07-28.142026_EMa4ET/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/07/28/peak-motifs.2026-07-28.142026_2026-07-28.142026_EMa4ET/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	prefix       	$RSAT/public_html/tmp/www-data/2026/07/28/peak-motifs.2026-07-28.142026_2026-07-28.142026_EMa4ET/results/discovered_motifs/peak-motifs_motifs_disco_compa
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/07/28/peak-motifs.2026-07-28.142026_2026-07-28.142026_EMa4ET/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	html_index   	$RSAT/public_html/tmp/www-data/2026/07/28/peak-motifs.2026-07-28.142026_2026-07-28.142026_EMa4ET/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	match_table_html	$RSAT/public_html/tmp/www-data/2026/07/28/peak-motifs.2026-07-28.142026_2026-07-28.142026_EMa4ET/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
 Matrices
	file1	10 matrices	$RSAT/public_html/tmp/www-data/2026/07/28/peak-motifs.2026-07-28.142026_2026-07-28.142026_EMa4ET/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	14	255
		file1	2	12	161
		file1	3	12	201
		file1	4	10	168
		file1	5	10	326
		file1	6	16	450
		file1	7	13	218
		file1	8	12	238
		file1	9	11	156
		file1	10	11	143
	file2	10 matrices	$RSAT/public_html/tmp/www-data/2026/07/28/peak-motifs.2026-07-28.142026_2026-07-28.142026_EMa4ET/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		14		255
		file2		2		12		161
		file2		3		12		201
		file2		4		10		168
		file2		5		10		326
		file2		6		16		450
		file2		7		13		218
		file2		8		12		238
		file2		9		11		156
		file2		10		11		143
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m2 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m2 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m1 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m5 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m4 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m5 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m4 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m3 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m1 1.000 1.000 16 16 16 16 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m3 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m2 0.935 0.760 16 13 13 16 0.8125 0.8125 1.0000 D 0
oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m1 0.935 0.760 13 16 13 16 0.8125 1.0000 0.8125 D 0
oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m3 0.714 0.659 13 12 12 13 0.9231 0.9231 1.0000 D 0
oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m2 0.714 0.659 12 13 12 13 0.9231 1.0000 0.9231 D 0
oligos_7nt_mkv4_m1 oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m1 oligos_6nt_mkv3_m1 0.853 0.652 16 14 13 17 0.7647 0.8125 0.9286 D 3
oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m1 oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m1 0.853 0.652 14 16 13 17 0.7647 0.9286 0.8125 D -3
oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m2 0.735 0.588 14 13 12 15 0.8000 0.8571 0.9231 D 2
oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m1 0.735 0.588 13 14 12 15 0.8000 0.9231 0.8571 D -2
oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m4 oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m4 0.740 0.569 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_6nt_mkv3_m4 oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m4 oligos_7nt_mkv4_m2 0.740 0.569 10 13 10 13 0.7692 1.0000 0.7692 R -2
oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m1 0.749 0.562 12 16 12 16 0.7500 1.0000 0.7500 D 0
oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m3 0.749 0.562 16 12 12 16 0.7500 0.7500 1.0000 D 0
oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m1 0.772 0.552 10 14 10 14 0.7143 1.0000 0.7143 D -4
oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m5 0.772 0.552 14 10 10 14 0.7143 0.7143 1.0000 D 4
oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m1 0.733 0.504 11 16 11 16 0.6875 1.0000 0.6875 R -5
oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m4 0.733 0.504 16 11 11 16 0.6875 0.6875 1.0000 R 0
oligos_6nt_mkv3_m5 oligos_7nt_mkv4_m1 oligos_6nt_mkv3_m5 oligos_7nt_mkv4_m1 0.732 0.458 10 16 10 16 0.6250 1.0000 0.6250 D -2
oligos_7nt_mkv4_m1 oligos_6nt_mkv3_m5 oligos_7nt_mkv4_m1 oligos_6nt_mkv3_m5 0.732 0.458 16 10 10 16 0.6250 0.6250 1.0000 D 2
oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m3 0.705 0.453 11 12 9 14 0.6429 0.8182 0.7500 D 2
oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m5 0.705 0.453 12 11 9 14 0.6429 0.7500 0.8182 D -2
oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m2 0.746 0.447 11 13 9 15 0.6000 0.8182 0.6923 D 2
oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m5 0.746 0.447 13 11 9 15 0.6000 0.6923 0.8182 D -2
oligos_7nt_mkv4_m1 oligos_6nt_mkv3_m4 oligos_7nt_mkv4_m1 oligos_6nt_mkv3_m4 0.708 0.442 16 10 10 16 0.6250 0.6250 1.0000 R 1
oligos_6nt_mkv3_m4 oligos_7nt_mkv4_m1 oligos_6nt_mkv3_m4 oligos_7nt_mkv4_m1 0.708 0.442 10 16 10 16 0.6250 1.0000 0.6250 R -5 
 Host name	rsat
 Job started	2026-07-28.142048
 Job done	2026-07-28.142055
 Seconds	0.38
	user	0.38
	system	0.23
	cuser	6.01
;	csystem	0.97