RSAT - peak-motifs result

Analysis: hsc (28/07/2026 14:21)

peak-motifs  -v 1 -title hsc -i $RSAT/public_html/tmp/www-data/2026/07/28/peak-motifs.2026-07-28.142026_2026-07-28.142026_EMa4ET/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/07/28/peak-motifs.2026-07-28.142026_2026-07-28.142026_EMa4ET

motif discovery
oligos_6nt_mkv3	oligos_6nt_mkv3_m1 assembly: cccgccccgc (sig=18.50; e-value=3.2e-19) RC: gcggggcggg oligos_6nt_mkv3_m2 assembly: gccaatca (sig=3.93; e-value=0.00012) RC: tgattggc oligos_6nt_mkv3_m3 assembly: cgagcgag (sig=1.94; e-value=0.011) RC: ctcgctcg oligos_6nt_mkv3_m4 assembly: cgaggc (sig=1.81; e-value=0.015) RC: gcctcg oligos_6nt_mkv3_m5 assembly: cccctc (sig=1.50; e-value=0.032) RC: gagggg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv4	oligos_7nt_mkv4_m1 assembly: ggccccgccccc (sig=15.87; e-value=1.3e-16) RC: gggggcggggcc oligos_7nt_mkv4_m2 assembly: ggccacgcc (sig=3.89; e-value=0.00013) RC: ggcgtggcc oligos_7nt_mkv4_m3 assembly: ggcccggc (sig=2.71; e-value=0.0019) RC: gccgggcc oligos_7nt_mkv4_m4 assembly: cggagcc (sig=1.46; e-value=0.035) RC: ggctccg oligos_7nt_mkv4_m5 assembly: caggccc (sig=1.29; e-value=0.051) RC: gggcctg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv3_m1	k-mer sig=18.50; evalue=3.2e-19 scCCcGCCCCgCcc GGGCGGGGCGGGGS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 120 (22.18%) Max nb of predicted sites per peak: 8  (chr1:2204942-2205143) Mean nb of predicted sites per peak: 1.48	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv3_m2	k-mer sig=3.93; evalue=0.00012 yrgCCAATcArm KYTGATTGGCYR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 42 (7.76%) Max nb of predicted sites per peak: 2  (chr9:37465526-37465727) Mean nb of predicted sites per peak: 1.21	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv3_m3	k-mer sig=1.94; evalue=0.011 agcGAGCGAgss SSCTCGCTCGCT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 22 (4.07%) Max nb of predicted sites per peak: 9  (chr7:69598241-69598442) Mean nb of predicted sites per peak: 1.64	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv3_m4	k-mer sig=1.81; evalue=0.015 ssCGAGGCbs SVGCCTCGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 71 (13.12%) Max nb of predicted sites per peak: 3  (chr2:172085280-172085481) Mean nb of predicted sites per peak: 1.11	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv3_m5	k-mer sig=1.50; evalue=0.032 ckCCCCTCyc GRGAGGGGMG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 71 (13.12%) Max nb of predicted sites per peak: 3  (chr9:137034358-137034559) Mean nb of predicted sites per peak: 1.23	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv4_m1	k-mer sig=15.87; evalue=1.3e-16 cwggCCCCGCCcccys SRGGGGGCGGGGCCWG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 159 (29.39%) Max nb of predicted sites per peak: 9  (chr1:2204942-2205143) Mean nb of predicted sites per peak: 1.74	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv4_m2	k-mer sig=3.89; evalue=0.00013 cwgGCCMCGCCcc GGGGCGKGGCCWG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 112 (20.70%) Max nb of predicted sites per peak: 6  (chr1:2204942-2205143) Mean nb of predicted sites per peak: 1.60	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv4_m3	k-mer sig=2.71; evalue=0.0019 ssgGCcCGGCss SSGCCGGGCCSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 42 (7.76%) Max nb of predicted sites per peak: 2  (chr8:73746936-73747137) Mean nb of predicted sites per peak: 1.17	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv4_m4	k-mer sig=1.46; evalue=0.035 kgCGGAGCcgr YCGGCTCCGCM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 54 (9.98%) Max nb of predicted sites per peak: 3  (chr11:64241349-64241550) Mean nb of predicted sites per peak: 1.09	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv4_m5	k-mer sig=1.29; evalue=0.051 cmCAGGCCCyg CRGGGCCTGKG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 55 (10.17%) Max nb of predicted sites per peak: 3  (chr21:36156469-36156670) Mean nb of predicted sites per peak: 1.16	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title hsc -i $RSAT/public_html/tmp/www-data/2026/07/28/peak-motifs.2026-07-28.142026_2026-07-28.142026_EMa4ET/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/07/28/peak-motifs.2026-07-28.142026_2026-07-28.142026_EMa4ET

Warning: Not a single pattern was found in file tmp/www-data/2026/07/28/peak-motifs.2026-07-28.142026_2026-07-28.142026_EMa4ET/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2026/07/28/peak-motifs.2026-07-28.142026_2026-07-28.142026_EMa4ET/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab