RSAT - peak-motifs result

Analysis: LMP_TA_vs_CT (28/07/2026 17:25)

peak-motifs  -v 1 -title LMP_TA_vs_CT -i $RSAT/public_html/tmp/www-data/2026/07/28/peak-motifs.2026-07-28.172131_2026-07-28.172131_7CJaVY/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db RSAT_nonredundant_vertebrates tf $RSAT/public_html/motif_databases/RSAT_nonredundant_vertebrates_2017.tf -scan_markov 1 -source getfasta -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/07/28/peak-motifs.2026-07-28.172131_2026-07-28.172131_7CJaVY

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: caggaagta (sig=6.89; e-value=1.3e-07) RC: tacttcctg oligos_6nt_mkv2_m2 assembly: aaaataa (sig=3.12; e-value=0.00076) RC: ttatttt oligos_6nt_mkv2_m3 assembly: acctccc (sig=3.04; e-value=0.00091) RC: gggaggt oligos_6nt_mkv2_m4 assembly: aaaccac (sig=2.81; e-value=0.0015) RC: gtggttt oligos_6nt_mkv2_m5 assembly: gcttcctg (sig=6.89; e-value=1.3e-07) RC: caggaagc	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: gcaggaagt (sig=4.33; e-value=4.7e-05) RC: acttcctgc oligos_7nt_mkv2_m2 assembly: gcaggaagc (sig=4.33; e-value=4.7e-05) RC: gcttcctgc oligos_7nt_mkv2_m3 assembly: cacctcc (sig=1.66; e-value=0.022) RC: ggaggtg oligos_7nt_mkv2_m4 assembly: aaaataaa (sig=1.58; e-value=0.026) RC: tttatttt oligos_7nt_mkv2_m5 assembly: aaaccaca (sig=1.55; e-value=0.028) RC: tgtggttt	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=6.89; evalue=1.3e-07 dgCAGGAAGtmwd HWKACTTCCTGCH	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
RSAT_nonredundant_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor dgCAGGAAGtmwd cluster_255 cluster_255 D 13 1.0000 0.831 0.831 NA NA cluster_670 cluster_670 D 12 0.9231 0.768 0.709 NA NA cluster_655 cluster_655 D 10 0.7692 0.911 0.701 NA NA Total matches= 63 (60 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 29 (58.00%) Max nb of predicted sites per peak: 4  (chromosome_GRCh38_10_1_133797422_1:47164945-47166792()) Mean nb of predicted sites per peak: 1.24	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv2_m2	k-mer sig=3.12; evalue=0.00076 wwAAAATAAww WWTTATTTTWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
RSAT_nonredundant_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwAAAATAAww cluster_1149 cluster_1149 D 9 0.8182 0.795 0.650 NA NA cluster_1824 cluster_1824 D 10 0.8333 0.769 0.641 NA NA cluster_1243 cluster_1243 D 9 0.8182 0.747 0.611 NA NA Total matches= 38 (35 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 27 (54.00%) Max nb of predicted sites per peak: 5  (chromosome_GRCh38_3_1_198295559_1:81823930-81824546()) Mean nb of predicted sites per peak: 2.15	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv2_m3	k-mer sig=3.04; evalue=0.00091 ycaCCTCCCks SMGGGAGGTGR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
RSAT_nonredundant_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ycaCCTCCCks cluster_631 cluster_631 D 11 1.0000 0.753 0.753 NA NA cluster_29 cluster_29 R 11 1.0000 0.709 0.709 NA NA cluster_269 cluster_269 R 10 0.9091 0.758 0.689 NA NA Total matches= 34 (31 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 18 (36.00%) Max nb of predicted sites per peak: 3  (chromosome_GRCh38_17_1_83257441_1:76028769-76030360()) Mean nb of predicted sites per peak: 1.50	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv2_m4	k-mer sig=2.81; evalue=0.0015 braAACCACam KTGTGGTTTYV	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
RSAT_nonredundant_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor braAACCACam cluster_97 cluster_97 R 11 0.8462 0.823 0.696 NA NA cluster_857 cluster_857 D 10 0.9091 0.712 0.647 NA NA cluster_1633 cluster_1633 D 9 0.8182 0.762 0.623 NA NA Total matches= 24 (21 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 15 (30.00%) Max nb of predicted sites per peak: 4  (chromosome_GRCh38_1_1_248956422_1:169692589-169693324()) Mean nb of predicted sites per peak: 1.33	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv2_m5	k-mer sig=6.89; evalue=1.3e-07 tdgCTTCCTGyh DRCAGGAAGCHA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
RSAT_nonredundant_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor tdgCTTCCTGyh cluster_255 cluster_255 R 12 0.9231 0.834 0.769 NA NA cluster_655 cluster_655 R 10 0.8333 0.883 0.736 NA NA cluster_254 cluster_254 R 9 0.7500 0.911 0.684 NA NA Total matches= 51 (48 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 25 (50.00%) Max nb of predicted sites per peak: 3  (chromosome_GRCh38_9_1_138394717_1:127882155-127883323()) Mean nb of predicted sites per peak: 1.28	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv2_m1	k-mer sig=4.33; evalue=4.7e-05 rrgCAGGAAGTra TYACTTCCTGCYY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
RSAT_nonredundant_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rrgCAGGAAGTra cluster_255 cluster_255 D 12 0.8571 0.822 0.705 NA NA cluster_655 cluster_655 D 10 0.7692 0.903 0.695 NA NA cluster_520 cluster_520 D 13 0.7647 0.902 0.690 NA NA Total matches= 49 (46 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 24 (48.00%) Max nb of predicted sites per peak: 3  (chromosome_GRCh38_10_1_133797422_1:47164945-47166792()) Mean nb of predicted sites per peak: 1.42	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv2_m2	k-mer sig=4.33; evalue=4.7e-05 rkgCAGGAAGCym KRGCTTCCTGCMY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
RSAT_nonredundant_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rkgCAGGAAGCym cluster_255 cluster_255 D 12 0.8571 0.778 0.667 NA NA cluster_655 cluster_655 D 10 0.7692 0.857 0.659 NA NA cluster_437 cluster_437 D 13 0.7222 0.878 0.634 NA NA Total matches= 38 (35 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 26 (52.00%) Max nb of predicted sites per peak: 3  (chromosome_GRCh38_9_1_138394717_1:127882155-127883323()) Mean nb of predicted sites per peak: 1.38	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv2_m3	k-mer sig=1.66; evalue=0.022 acCACCTCChs SDGGAGGTGGT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
RSAT_nonredundant_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor acCACCTCChs cluster_953 cluster_953 R 10 0.9091 0.762 0.692 NA NA cluster_670 cluster_670 R 11 0.9167 0.752 0.689 NA NA cluster_18 cluster_18 R 11 0.9167 0.719 0.660 NA NA Total matches= 38 (35 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 26 (52.00%) Max nb of predicted sites per peak: 3  (chromosome_GRCh38_9_1_138394717_1:128007198-128008773()) Mean nb of predicted sites per peak: 1.42	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv2_m4	k-mer sig=1.58; evalue=0.026 aaAAAAwAAAaa TTTTTWTTTTTT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
RSAT_nonredundant_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor aaAAAAwAAAaa cluster_1243 cluster_1243 D 9 0.7500 0.918 0.688 NA NA cluster_1809 cluster_1809 D 12 0.8000 0.811 0.649 NA NA cluster_780 cluster_780 D 12 0.7059 0.873 0.616 NA NA Total matches= 36 (33 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 26 (52.00%) Max nb of predicted sites per peak: 17  (chromosome_GRCh38_19_1_58617616_1:8193151-8196951()) Mean nb of predicted sites per peak: 6.58	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv2_m5	k-mer sig=1.55; evalue=0.028 wrAAACCACArr YYTGTGGTTTYW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
RSAT_nonredundant_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wrAAACCACArr cluster_97 cluster_97 R 12 0.9231 0.862 0.795 NA NA cluster_384 cluster_384 R 12 0.9231 0.772 0.712 NA NA cluster_683 cluster_683 D 12 0.7500 0.902 0.676 NA NA Total matches= 22 (19 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 18 (36.00%) Max nb of predicted sites per peak: 4  (chromosome_GRCh38_1_1_248956422_1:169692589-169693324()) Mean nb of predicted sites per peak: 1.28	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Predicted sites on test peaks (all motifs)

[tab] [bed]

Command:  peak-motifs  -v 1 -title LMP_TA_vs_CT -i $RSAT/public_html/tmp/www-data/2026/07/28/peak-motifs.2026-07-28.172131_2026-07-28.172131_7CJaVY/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db RSAT_nonredundant_vertebrates tf $RSAT/public_html/motif_databases/RSAT_nonredundant_vertebrates_2017.tf -scan_markov 1 -source getfasta -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/07/28/peak-motifs.2026-07-28.172131_2026-07-28.172131_7CJaVY

Warning: Not a single pattern was found in file tmp/www-data/2026/07/28/peak-motifs.2026-07-28.172131_2026-07-28.172131_7CJaVY/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2026/07/28/peak-motifs.2026-07-28.172131_2026-07-28.172131_7CJaVY/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab