RSAT - peak-motifs result

Analysis: LMP (28/07/2026 17:53)

peak-motifs  -v 1 -title LMP -i $RSAT/public_html/tmp/www-data/2026/07/28/peak-motifs.2026-07-28.174923_2026-07-28.174923_yVc7AM/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db RSAT_nonredundant_vertebrates tf $RSAT/public_html/motif_databases/RSAT_nonredundant_vertebrates_2017.tf -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/07/28/peak-motifs.2026-07-28.174923_2026-07-28.174923_yVc7AM

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: gaggaagtg (sig=4.56; e-value=2.8e-05) RC: cacttcctc oligos_6nt_mkv2_m2 assembly: cacttcccc (sig=4.35; e-value=4.5e-05) RC: ggggaagtg oligos_6nt_mkv2_m3 assembly: aaccaca (sig=3.47; e-value=0.00034) RC: tgtggtt oligos_6nt_mkv2_m4 assembly: gcttcctc (sig=4.56; e-value=2.8e-05) RC: gaggaagc oligos_6nt_mkv2_m5 assembly: gaactag (sig=1.15; e-value=0.071) RC: ctagttc	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: acttcccct (sig=4.91; e-value=1.2e-05) RC: aggggaagt oligos_7nt_mkv2_m2 assembly: acttcctgc (sig=2.10; e-value=0.0079) RC: gcaggaagt oligos_7nt_mkv2_m3 assembly: aaaccaca (sig=2.06; e-value=0.0087) RC: tgtggttt oligos_7nt_mkv2_m4 assembly: cccagcc (sig=1.60; e-value=0.025) RC: ggctggg oligos_7nt_mkv2_m5 assembly: agcttcctgc (sig=2.00; e-value=0.01) RC: gcaggaagct	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=4.56; evalue=2.8e-05 rrGAGGAAGTdgw WCHACTTCCTCYY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
RSAT_nonredundant_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rrGAGGAAGTdgw cluster_670 cluster_670 D 12 0.9231 0.863 0.797 NA NA cluster_255 cluster_255 D 13 1.0000 0.722 0.722 NA NA cluster_2136 cluster_2136 D 13 0.8125 0.859 0.698 NA NA Total matches= 45 (42 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 16 (25.81%) Max nb of predicted sites per peak: 3  (chr12:75974416-75974602) Mean nb of predicted sites per peak: 1.12	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv2_m2	k-mer sig=4.35; evalue=4.5e-05 ddcACTTCCCcht ADGGGGAAGTGHH	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
RSAT_nonredundant_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ddcACTTCCCcht cluster_2136 cluster_2136 R 13 0.8125 0.880 0.715 NA NA cluster_670 cluster_670 R 12 0.9231 0.761 0.703 NA NA cluster_2013 cluster_2013 R 12 0.9231 0.742 0.685 NA NA Total matches= 52 (49 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 18 (29.03%) Max nb of predicted sites per peak: 2  (chr9:39464459-39464653) Mean nb of predicted sites per peak: 1.17	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv2_m3	k-mer sig=3.47; evalue=0.00034 hwAACCACArr YYTGTGGTTWD	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
RSAT_nonredundant_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor hwAACCACArr cluster_97 cluster_97 R 11 0.8462 0.859 0.727 NA NA cluster_630 cluster_630 R 8 0.7273 0.938 0.682 NA NA cluster_683 cluster_683 D 11 0.6875 0.931 0.640 NA NA Total matches= 15 (12 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 14 (22.58%) Max nb of predicted sites per peak: 2  (chr9:129271241-129271424) Mean nb of predicted sites per peak: 1.14	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv2_m4	k-mer sig=4.56; evalue=2.8e-05 rdGCTTCCTcyt ARGAGGAAGCHY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
RSAT_nonredundant_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rdGCTTCCTcyt cluster_796 cluster_796 D 10 0.8333 0.822 0.685 NA NA cluster_255 cluster_255 R 12 0.9231 0.735 0.678 NA NA cluster_254 cluster_254 R 9 0.7500 0.878 0.659 NA NA Total matches= 48 (45 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 17 (27.42%) Max nb of predicted sites per peak: 2  (chr19:8195323-8195512) Mean nb of predicted sites per peak: 1.12	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv2_m5	k-mer sig=1.15; evalue=0.071 mgsAACTAGak MTCTAGTTSCK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
RSAT_nonredundant_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor mgsAACTAGak cluster_157 cluster_157 R 11 1.0000 0.806 0.806 NA NA cluster_1148 cluster_1148 D 9 0.8182 0.730 0.598 NA NA cluster_632 cluster_632 D 9 0.8182 0.703 0.575 NA NA Total matches= 8 (5 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 11 (17.74%) Max nb of predicted sites per peak: 2  (chr19:8194556-8194736) Mean nb of predicted sites per peak: 1.09	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv2_m1	k-mer sig=4.91; evalue=1.2e-05 kkaCTTCCCCwty RAWGGGGAAGTMM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
RSAT_nonredundant_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor kkaCTTCCCCwty cluster_2136 cluster_2136 R 13 0.8125 0.780 0.634 NA NA cluster_51 cluster_51 R 13 0.7647 0.822 0.629 NA NA cluster_2013 cluster_2013 R 11 0.7857 0.797 0.626 NA NA Total matches= 34 (31 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 17 (27.42%) Max nb of predicted sites per peak: 2  (chr6:14109004-14109196) Mean nb of predicted sites per peak: 1.12	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv2_m2	k-mer sig=2.10; evalue=0.0079 tcaCTTCCTGyyt ARRCAGGAAGTGA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
RSAT_nonredundant_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor tcaCTTCCTGyyt cluster_255 cluster_255 R 12 0.8571 0.855 0.733 NA NA cluster_655 cluster_655 R 10 0.7692 0.913 0.703 NA NA cluster_520 cluster_520 R 13 0.7647 0.899 0.687 NA NA Total matches= 53 (50 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 18 (29.03%) Max nb of predicted sites per peak: 2  (chr9:39464459-39464653) Mean nb of predicted sites per peak: 1.06	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv2_m3	k-mer sig=2.06; evalue=0.0087 rmAAACCACArr YYTGTGGTTTKY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
RSAT_nonredundant_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rmAAACCACArr cluster_97 cluster_97 R 12 0.9231 0.865 0.798 NA NA cluster_384 cluster_384 R 12 0.9231 0.760 0.702 NA NA cluster_683 cluster_683 D 12 0.7500 0.913 0.685 NA NA Total matches= 23 (20 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 17 (27.42%) Max nb of predicted sites per peak: 2  (chrX:13488261-13488451) Mean nb of predicted sites per peak: 1.06	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv2_m4	k-mer sig=1.60; evalue=0.025 wsCCCAGCCyv BRGGCTGGGSW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
RSAT_nonredundant_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wsCCCAGCCyv cluster_963 cluster_963 D 10 0.9091 0.773 0.703 NA NA cluster_1009 cluster_1009 R 10 0.9091 0.766 0.696 NA NA cluster_1907 cluster_1907 R 10 0.9091 0.741 0.673 NA NA Total matches= 43 (40 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 10 (16.13%) Max nb of predicted sites per peak: 3  (chr19:34964119-34964311) Mean nb of predicted sites per peak: 1.50	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv2_m5	k-mer sig=2.00; evalue=0.01 ykaGCTTCCTGyvw WBRCAGGAAGCTMR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
RSAT_nonredundant_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ykaGCTTCCTGyvw cluster_255 cluster_255 R 13 0.9286 0.733 0.681 NA NA cluster_819 cluster_819 R 14 0.8235 0.787 0.649 NA NA cluster_437 cluster_437 R 14 0.7778 0.805 0.626 NA NA Total matches= 27 (24 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 13 (20.97%) Max nb of predicted sites per peak: 2  (chr1:230186994-230187181) Mean nb of predicted sites per peak: 1.08	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title LMP -i $RSAT/public_html/tmp/www-data/2026/07/28/peak-motifs.2026-07-28.174923_2026-07-28.174923_yVc7AM/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db RSAT_nonredundant_vertebrates tf $RSAT/public_html/motif_databases/RSAT_nonredundant_vertebrates_2017.tf -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/07/28/peak-motifs.2026-07-28.174923_2026-07-28.174923_yVc7AM

Warning: Not a single pattern was found in file tmp/www-data/2026/07/28/peak-motifs.2026-07-28.174923_2026-07-28.174923_yVc7AM/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2026/07/28/peak-motifs.2026-07-28.174923_2026-07-28.174923_yVc7AM/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab