

rsync -ruptl /var/www/html/rsat/perl-scripts/lib/js /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi


rsync -ruptl /var/www/html/rsat/public_html/images/program_icons/matrix-clustering_icons /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_query_matrices.meme -from meme -to tf -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_data/Collection_1_input_motifs_processed_1.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_data/Collection_1_input_motifs_processed_1.tf -from tf -to transfac -prefix_id Collection_1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_data/Collection_1_input_motifs_processed.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_data/Collection_1_input_motifs_processed.tf  > /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_data/input_motifs_processed.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_data/input_motifs_processed.tf -split -from tf -to tf -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_data/motif


 cat /var/www/html/rsat/R-scripts/matrix-clustering.R | /usr/bin/R --slave --no-save --no-restore --no-environ --args " infile = '/var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_tables/pairwise_compa.tab'; hclust.method = 'average'; description.file = '/var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_tables/pairwise_compa_matrix_descriptions.tab'; distance.table = '/var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_tables/distance_table.tab'; alignment.file = '/var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_tables/alignment_table.tab'; verbosity = 0; metric = 'Ncor'; heatmap.color.palette = 'YlOrRd'; heatmap.color.classes = '9'; export.newick = 0; radial.only = 0; draw.heatmap = 1; draw.consensus = 0; pos.hclust.in.heatmap = 'column'; lthsp = 'cor_0.4_Ncor_0.3_'; out.prefix = '/var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering'; "


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_tables/cluster_1_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_data/cluster_1_transfac_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m10_AEVSRSTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m12_ASISRSTRR_CitT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m11_AMASRSTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m10_AEVSRSTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m12_ASISRSTRR_CitT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m8_AEASRTTRR_CitTRegPrecise_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m11_AMASRSTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m10_AEVSRSTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m12_ASISRSTRR_CitT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/IC_test_2026-08-11.092313_R4Rafy


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/IC_test_2026-08-11.092313_7j83KQ


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/IC_test_2026-08-11.092313_S7KKnI


cat /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m1_AEASRTTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m8_AEASRTTRR_CitTRegPrecise_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m11_AMASRSTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m10_AEVSRSTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m12_ASISRSTRR_CitT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m7_ADVSRTTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m1_AEASRTTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m8_AEASRTTRR_CitTRegPrecise_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m11_AMASRSTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m10_AEVSRSTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m12_ASISRSTRR_CitT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_node_5_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m2_AEIARVTRR_DctR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m7_ADVSRTTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m1_AEASRTTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m8_AEASRTTRR_CitTRegPrecise_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m11_AMASRSTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m10_AEVSRSTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m12_ASISRSTRR_CitT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_6/cluster_1_node_6_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_node_5_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_6/cluster_1_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_6/cluster_1_node_6_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_6/cluster_1_nb_motifs_7.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/IC_test_2026-08-11.092314_G1Z779


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/IC_test_2026-08-11.092314_Y1Q11J


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_nb_motifs_6.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/IC_test_2026-08-11.092314_4B4GTK


cat /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_6/cluster_1_node_6_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m3_TEISQVSRK_MaeM_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m6_TDISRVSRK_DcuR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_7/cluster_1_node_7_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m4_ADSSKTTRR_CitB_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m5_AEISRTTRR_CitB_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_9/cluster_1_node_9_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_7/cluster_1_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_7/cluster_1_node_7_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m15_IEVSRTTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m2_AEIARVTRR_DctR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m7_ADVSRTTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m1_AEASRTTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m8_AEASRTTRR_CitTRegPrecise_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m11_AMASRSTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m10_AEVSRSTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m12_ASISRSTRR_CitT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_8/cluster_1_node_8_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_9/cluster_1_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_9/cluster_1_node_9_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_8/cluster_1_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_8/cluster_1_node_8_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_9/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/IC_test_2026-08-11.092315_oZVrir


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_7/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/IC_test_2026-08-11.092315_d8nXLk


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_8/cluster_1_nb_motifs_8.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/IC_test_2026-08-11.092315_Sn9a5V


cat /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_8/cluster_1_node_8_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_9/cluster_1_node_9_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_7/cluster_1_node_7_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m9_AEIARVTRR_DctRRegPrecise_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m15_IEVSRTTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m2_AEIARVTRR_DctR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m7_ADVSRTTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m1_AEASRTTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m8_AEASRTTRR_CitTRegPrecise_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m11_AMASRSTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m10_AEVSRSTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m12_ASISRSTRR_CitT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_10/cluster_1_node_10_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m14_IEASRTTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m9_AEIARVTRR_DctRRegPrecise_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m15_IEVSRTTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m2_AEIARVTRR_DctR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m7_ADVSRTTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m1_AEASRTTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m8_AEASRTTRR_CitTRegPrecise_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m11_AMASRSTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m10_AEVSRSTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m12_ASISRSTRR_CitT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_11/cluster_1_node_11_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m13_ATVSRATQR_CitB_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m14_IEASRTTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m9_AEIARVTRR_DctRRegPrecise_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m15_IEVSRTTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m2_AEIARVTRR_DctR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m7_ADVSRTTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m1_AEASRTTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m8_AEASRTTRR_CitTRegPrecise_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m11_AMASRSTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m10_AEVSRSTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m12_ASISRSTRR_CitT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_12/cluster_1_node_12_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_10/cluster_1_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_10/cluster_1_node_10_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_11/cluster_1_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_11/cluster_1_node_11_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_12/cluster_1_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_12/cluster_1_node_12_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_10/cluster_1_nb_motifs_9.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/IC_test_2026-08-11.092316_5o3hjX


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_12/cluster_1_nb_motifs_11.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/IC_test_2026-08-11.092316_2OUeuh


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_11/cluster_1_nb_motifs_10.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/IC_test_2026-08-11.092316_cF4nfm


cat /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_10/cluster_1_node_10_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_12/cluster_1_node_12_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_11/cluster_1_node_11_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m16_TEISQVSRK_MalR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m4_ADSSKTTRR_CitB_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m5_AEISRTTRR_CitB_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_13/cluster_1_node_13_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m3_TEISQVSRK_MaeM_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m6_TDISRVSRK_DcuR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m16_TEISQVSRK_MalR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m4_ADSSKTTRR_CitB_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m5_AEISRTTRR_CitB_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_14/cluster_1_node_14_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_13/cluster_1_node_13_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_13/cluster_1_node_13_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_14/cluster_1_node_14_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_14/cluster_1_node_14_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m13_ATVSRATQR_CitB_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m14_IEASRTTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m9_AEIARVTRR_DctRRegPrecise_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m15_IEVSRTTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m2_AEIARVTRR_DctR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m7_ADVSRTTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m1_AEASRTTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m8_AEASRTTRR_CitTRegPrecise_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m11_AMASRSTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m10_AEVSRSTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m12_ASISRSTRR_CitT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m3_TEISQVSRK_MaeM_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m6_TDISRVSRK_DcuR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m16_TEISQVSRK_MalR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m4_ADSSKTTRR_CitB_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/Collection_1_m5_AEISRTTRR_CitB_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_15/cluster_1_node_15_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_15/cluster_1_node_15_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_15/cluster_1_node_15_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_13/cluster_1_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/IC_test_2026-08-11.092317_4XTpNv


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_14/cluster_1_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/IC_test_2026-08-11.092317_totQpW


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_15/cluster_1_nb_motifs_16.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/IC_test_2026-08-11.092317_p5SmNu


cat /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_13/cluster_1_node_13_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_14/cluster_1_node_14_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_15/cluster_1_node_15_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


rm -r /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_pairwise_compa_logos


cp /var/www/html/rsat/public_html/templates_html/display_d3_tree.html /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_logo_tree.html


cp /var/www/html/rsat/public_html/templates_html/display_small_d3_tree.html /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_portable_logo_tree.html


mv /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_temporary.html /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_logo_tree.html


mv /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_temporary_2.html /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_portable_logo_tree.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_tables/pairwise_compa_matrix_descriptions.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_html/pairwise_compa_matrix_descriptions.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_tables/distance_table.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_tables/distance_table.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_tables/alignment_table.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_tables/alignment_table.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_tables/clusters.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_tables/clusters.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_tables/clusters_motif_names.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_tables/clusters_motif_names.html


mv -f /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_temporary_2.html /var/www/html/rsat/public_html/tmp/www-data/2026/08/11/matrix-clustering_2026-08-11.092306_ODpWIi/matrix-clustering_portable_logo_tree.html
