; pattern-assembly  -v 1 -i $RSAT/public_html/tmp/www-data/2026/08/11/pattern-assembly_2026-08-11.111849_ubUAQ9.pat -maxfl 1 -subst 1 -maxpat 200 -2str
; Input file	$RSAT/public_html/tmp/www-data/2026/08/11/pattern-assembly_2026-08-11.111849_ubUAQ9.pat
; Input score column           	8
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	0
; Max number of patterns       	200
; Number of input patterns     	6
;

; assembly # 1	seed: caacca	2 assembled patterns	length 7
;alignt	rev_cpl	score
ccaacca	tggttgg	0.84
.caacca	tggttg.	2.51
ccaacca	tggttgg	2.51	best consensus

; assembly # 2	seed: ctgtggaa	3 assembled patterns	length 8
; alignt	 rev_cpl	score
ctgtggaa	ttccacag	2.50
ctgtgga.	.tccacag	1.23
ctgtgg..	..ccacag	0.06
ctgtggaa	ttccacag	2.50	best consensus

; assembly # 3	seed: ctaggca	1 assembled patterns	length 7
;alignt	rev_cpl	score
ctaggca	tgcctag	0.11
ctaggca	tgcctag	0.11	best consensus
; Host name	rsat
; Job started	2026-08-11.111849
; Job done	2026-08-11.111849
; Seconds	0.17
;	user	0.17
;	system	0.01
;	cuser	0
;	csystem	0