matrix-clustering oct4_motifs_found_in_chen_2008_peak

matrix-clustering  -v 1 -max_matrices 300 -matrix oct4_peak_motifs $RSAT/public_html/tmp/www-data/2026/08/17/matrix-clustering_2026-08-17.144337_biFEYG/matrix-clustering_query_matrices.transfac transfac -hclust_method average -calc sum -title oct4_motifs_found_in_chen_2008_peak_sets -metric_build_tree Ncor -lth w 5 -lth cor 0.6 -lth Ncor 0.4 -quick -radial_tree_only -label_in_tree name -return json,heatmap -o $RSAT/public_html/tmp/www-data/2026/08/17/matrix-clustering_2026-08-17.144337_biFEYG/matrix-clustering

Results Summary

Nb Input motifs

Nb Input collections

Nb Clusters Found

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Root motifs

Complete results [zip]

Parameters used

Linkage method

Similarity metric

Thresholds to partition the tree

RSAT - matrix-clustering result

Analysis: oct4_motifs_found_in_chen_2008_peak_sets (17/08/2026 14:43)

Command

Results Summary

Radial Tree