; matrix-scan -v 1 -quick -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/08/17/matrix-scan_2026-08-17.133119_WUcNIt.matrix -pseudo 1 -decimals 1 -2str -origin end -bgfile $RSAT/public_html/data/genomes/Arabidopsis_thaliana.TAIR10.60/oligo-frequencies/2nt_upstream-noorf_Arabidopsis_thaliana.TAIR10.60-ovlp-1str.freq -bg_pseudo 0.01 -return limits -return pval -uth pval 0.001 -i $RSAT/public_html/tmp/www-data/2026/08/17/tmp_sequence_2026-08-17.133119_lIPkOe.fasta -seq_format fasta -n score ; Quick counting mode ; Input files ; bg $RSAT/public_html/data/genomes/Arabidopsis_thaliana.TAIR10.60/oligo-frequencies/2nt_upstream-noorf_Arabidopsis_thaliana.TAIR10.60-ovlp-1str.freq ; input $RSAT/public_html/tmp/www-data/2026/08/17/tmp_sequence_2026-08-17.133119_lIPkOe.fasta ; Matrix files ; matrix 1 $RSAT/public_html/tmp/www-data/2026/08/17/matrix-scan_2026-08-17.133119_WUcNIt.matrix ; Sequence format fasta ; Pseudo counts 1 ; Background model ; Method file ; Markov order 1 ; Strand sensitive ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.34589 ; c 0.15671 ; g 0.15366 ; t 0.34374 ; Thresholds lower upper ; pval NA 0.001 ; Output columns ; 1 seq_id ; 2 ft_type ; 3 ft_name ; 4 strand ; 5 start ; 6 end ; 7 sequence ; 8 weight #seq_id ft_type ft_name strand start end sequence weight Pval ln_Pval sig ACYB-2 limit START_END D -500 -1 . 0 0 0 0 AT1G05617 limit START_END D -500 -1 . 0 0 0 0 AT3G29631 limit START_END D -500 -1 . 0 0 0 0 AT2G47300 limit START_END D -500 -1 . 0 0 0 0 PUB45 limit START_END D -500 -1 . 0 0 0 0 ARK2 limit START_END D -500 -1 . 0 0 0 0 AT2G06385 limit START_END D -500 -1 . 0 0 0 0 MCT2 limit START_END D -500 -1 . 0 0 0 0 GOS11 limit START_END D -500 -1 . 0 0 0 0 AT5G46720 limit START_END D -500 -1 . 0 0 0 0 AT2G22960 limit START_END D -500 -1 . 0 0 0 0 NAD2B limit START_END D -500 -1 . 0 0 0 0 BCA2 limit START_END D -500 -1 . 0 0 0 0 SUVH5 limit START_END D -500 -1 . 0 0 0 0 AT5G07865 limit START_END D -500 -1 . 0 0 0 0 CCR2 limit START_END D -500 -1 . 0 0 0 0 RAD50 limit START_END D -500 -1 . 0 0 0 0 AT3G44140 limit START_END D -500 -1 . 0 0 0 0 CTPA3 limit START_END D -500 -1 . 0 0 0 0 CYP96A10 limit START_END D -500 -1 . 0 0 0 0 RPS18B limit START_END D -500 -1 . 0 0 0 0 HSBP limit START_END D -500 -1 . 0 0 0 0 AT1G65240 limit START_END D -500 -1 . 0 0 0 0 AT1G22290 limit START_END D -500 -1 . 0 0 0 0 ACYB-2 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -15 -8 TTCCGCGC 5.4 4.2e-04 -7.775 3.377 AT1G05617 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -441 -434 ACTGCCGC 4.9 8.8e-04 -7.036 3.056 AT1G05617 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -222 -215 TCTCCTGC 5.1 6.7e-04 -7.308 3.174 AT2G47300 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -467 -460 TTGCACGC 5.3 5.9e-04 -7.435 3.229 PUB45 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -236 -229 TTGCCCGT 5.0 7.4e-04 -7.209 3.131 PUB45 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -211 -204 TTTATCGC 4.7 9.5e-04 -6.959 3.022 ARK2 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -380 -373 AATCTCGC 4.8 8.8e-04 -7.036 3.056 AT2G06385 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -300 -293 TTGCCGGC 5.1 7.4e-04 -7.209 3.131 AT2G06385 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -172 -165 TGTCCCAC 4.8 8.8e-04 -7.036 3.056 AT2G06385 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -162 -155 TGTCCCAC 4.8 8.8e-04 -7.036 3.056 GOS11 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -499 -492 TTTCCCGA 7.1 1.4e-04 -8.874 3.854 GOS11 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -335 -328 TTACCGGC 5.3 5.1e-04 -7.581 3.292 GOS11 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -329 -322 TCTTCCGC 5.2 5.9e-04 -7.435 3.229 GOS11 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -299 -292 ATTGCCGC 7.0 1.6e-04 -8.740 3.796 GOS11 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -52 -45 ATACCCGC 8.0 2.8e-05 -10.483 4.553 NAD2B site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -376 -369 TTCCCCGT 4.9 8.0e-04 -7.131 3.097 NAD2B site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -355 -348 CTTCCGGC 5.5 4.2e-04 -7.775 3.377 NAD2B site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -286 -279 ATTCCGGC 6.8 2.1e-04 -8.468 3.678 NAD2B site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -132 -125 CTTCCCAC 5.1 6.7e-04 -7.308 3.174 BCA2 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -219 -212 TTTCCCTC 6.9 1.9e-04 -8.568 3.721 AT5G07865 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -482 -475 TCTCCCGA 5.1 6.7e-04 -7.308 3.174 CCR2 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -416 -409 TTGCCCGT 5.0 7.4e-04 -7.209 3.131 CCR2 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -11 -4 CTTCGCGC 6.0 3.1e-04 -8.079 3.509 RAD50 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -488 -481 GTTCCCGT 5.4 4.2e-04 -7.775 3.377 AT3G44140 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -80 -73 TTGCCCTC 4.8 8.8e-04 -7.036 3.056 AT1G22290 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -413 -406 CTTCCCTC 5.2 5.9e-04 -7.435 3.229 ACYB-2 site 5015_E2Fb_Athamap_20091028_ R -15 -8 TTCCGCGC 5.4 4.4e-04 -7.729 3.357 AT1G05617 site 5015_E2Fb_Athamap_20091028_ D -222 -215 TCTCCTGC 5.0 6.5e-04 -7.339 3.187 AT2G47300 site 5015_E2Fb_Athamap_20091028_ R -467 -460 TTGCACGC 5.2 5.1e-04 -7.581 3.292 PUB45 site 5015_E2Fb_Athamap_20091028_ R -236 -229 TTGCCCGT 5.0 6.9e-04 -7.279 3.161 PUB45 site 5015_E2Fb_Athamap_20091028_ D -211 -204 TTTATCGC 4.6 8.2e-04 -7.106 3.086 AT2G06385 site 5015_E2Fb_Athamap_20091028_ R -300 -293 TTGCCGGC 5.0 6.5e-04 -7.339 3.187 AT2G06385 site 5015_E2Fb_Athamap_20091028_ R -172 -165 TGTCCCAC 4.7 7.9e-04 -7.143 3.102 AT2G06385 site 5015_E2Fb_Athamap_20091028_ D -162 -155 TGTCCCAC 4.7 7.9e-04 -7.143 3.102 GOS11 site 5015_E2Fb_Athamap_20091028_ D -499 -492 TTTCCCGA 7.3 1.3e-04 -8.948 3.886 GOS11 site 5015_E2Fb_Athamap_20091028_ D -335 -328 TTACCGGC 5.3 5.1e-04 -7.581 3.292 GOS11 site 5015_E2Fb_Athamap_20091028_ R -329 -322 TCTTCCGC 5.1 5.8e-04 -7.452 3.237 GOS11 site 5015_E2Fb_Athamap_20091028_ R -299 -292 ATTGCCGC 6.8 1.9e-04 -8.568 3.721 GOS11 site 5015_E2Fb_Athamap_20091028_ D -52 -45 ATACCCGC 7.8 3.7e-05 -10.205 4.432 NAD2B site 5015_E2Fb_Athamap_20091028_ R -376 -369 TTCCCCGT 4.8 7.5e-04 -7.195 3.125 NAD2B site 5015_E2Fb_Athamap_20091028_ D -355 -348 CTTCCGGC 5.3 4.4e-04 -7.729 3.357 NAD2B site 5015_E2Fb_Athamap_20091028_ R -286 -279 ATTCCGGC 6.7 2.1e-04 -8.468 3.678 NAD2B site 5015_E2Fb_Athamap_20091028_ R -132 -125 CTTCCCAC 5.0 6.9e-04 -7.279 3.161 BCA2 site 5015_E2Fb_Athamap_20091028_ D -330 -323 TTCCCCAC 4.5 9.4e-04 -6.970 3.027 BCA2 site 5015_E2Fb_Athamap_20091028_ D -219 -212 TTTCCCTC 7.1 1.7e-04 -8.680 3.770 AT5G07865 site 5015_E2Fb_Athamap_20091028_ D -482 -475 TCTCCCGA 5.0 6.5e-04 -7.339 3.187 CCR2 site 5015_E2Fb_Athamap_20091028_ D -416 -409 TTGCCCGT 5.0 6.9e-04 -7.279 3.161 CCR2 site 5015_E2Fb_Athamap_20091028_ D -11 -4 CTTCGCGC 5.8 3.1e-04 -8.079 3.509 RAD50 site 5015_E2Fb_Athamap_20091028_ D -488 -481 GTTCCCGT 5.3 5.1e-04 -7.581 3.292 AT3G44140 site 5015_E2Fb_Athamap_20091028_ D -181 -174 TTTAACGC 4.5 9.4e-04 -6.970 3.027 AT3G44140 site 5015_E2Fb_Athamap_20091028_ R -80 -73 TTGCCCTC 4.7 7.9e-04 -7.143 3.102 AT1G22290 site 5015_E2Fb_Athamap_20091028_ D -413 -406 CTTCCCTC 5.0 6.5e-04 -7.339 3.187 ACYB-2 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ R -62 -52 AAACCGCGATA 5.7 3.3e-04 -8.016 3.481 ACYB-2 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ R -17 -7 CTTCCGCGCTT 5.4 4.2e-04 -7.775 3.377 AT1G05617 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -440 -430 CTGCCGCCAAA 6.2 2.3e-04 -8.377 3.638 AT3G29631 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -203 -193 TTTCCGACAAT 4.8 7.2e-04 -7.236 3.143 AT2G47300 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ R -165 -155 TTCTAGCCCAA 5.9 3.1e-04 -8.079 3.509 ARK2 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -379 -369 ATCTCGCCAAC 5.8 3.1e-04 -8.079 3.509 ARK2 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ R -211 -201 ATTGCGCCGAA 4.4 9.8e-04 -6.928 3.009 ARK2 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -34 -24 GGCCCGCCAAC 4.9 6.5e-04 -7.339 3.187 GOS11 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -498 -488 TTCCCGAGCAC 6.0 2.9e-04 -8.146 3.538 GOS11 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -334 -324 TACCGGCGGAA 4.8 7.7e-04 -7.169 3.114 GOS11 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ R -303 -293 TTGCCGCCCGT 6.8 1.5e-04 -8.805 3.824 GOS11 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ R -73 -63 TTTCCACCCTA 5.1 6.0e-04 -7.419 3.222 GOS11 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -51 -41 TACCCGCCGAA 9.3 1.0e-05 -11.513 5.000 AT5G46720 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -104 -94 AACTCGCCAAT 6.5 1.8e-04 -8.623 3.745 AT2G22960 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -76 -66 TACCCACTATT 5.6 3.6e-04 -7.929 3.444 NAD2B site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -301 -291 TACACGCTAGA 4.9 6.5e-04 -7.339 3.187 NAD2B site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ R -121 -111 ATCCCGAGCCT 4.6 8.3e-04 -7.094 3.081 NAD2B site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -46 -36 TTCGCGTCTAT 5.8 3.3e-04 -8.016 3.481 NAD2B site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -12 -2 TACCCACCCTA 7.8 5.3e-05 -9.845 4.276 SUVH5 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ R -371 -361 TTCTCGACATT 5.0 6.5e-04 -7.339 3.187 AT5G07865 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -481 -471 CTCCCGACAAT 6.0 2.7e-04 -8.217 3.569 RAD50 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -487 -477 TTCCCGTTCGT 5.0 6.0e-04 -7.419 3.222 CTPA3 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -35 -25 ATCCAGCCCAT 7.6 6.6e-05 -9.626 4.180 CYP96A10 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -277 -267 TTCCTTCCAAA 4.6 8.3e-04 -7.094 3.081 AT1G65240 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -400 -390 TTCGCTCGGAA 4.5 9.1e-04 -7.002 3.041 AT1G22290 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -412 -402 TTCCCTCGAGA 5.5 3.9e-04 -7.849 3.409 AT1G22290 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -106 -96 ATCCAGCGCCA 5.0 6.5e-04 -7.339 3.187 ; ; Matrices ; matrix name ncol nrow pseudo Wmin Wmax Wrange ; 1 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ 8 4 0 -11.100 10.500 21.600 a:0.346 c:0.157 g:0.154 t:0.344 ; 2 5015_E2Fb_Athamap_20091028_ 8 4 0 -12.900 10.900 23.800 a:0.346 c:0.157 g:0.154 t:0.344 ; 3 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ 11 4 0 -19.800 12.800 32.600 a:0.346 c:0.157 g:0.154 t:0.344 ; Number of sequences scanned 24 ; Sum of sequence lengths 12000 ; N residues 0 ; Matches per matrix ; matrix name matches scored ; 1 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ 26 0 ; 2 5015_E2Fb_Athamap_20091028_ 26 0 ; 3 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ 27 0 ; TOTAL 79 0 ; Host name rsat ; Job started 2026-08-17.133119 ; Job done 2026-08-17.133121 ; Seconds 0.49 ; user 0.49 ; system 0.04 ; cuser 0.76 ; csystem 0.11