; matrix-scan -v 1 -quick -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/08/17/matrix-scan_2026-08-17.165959_McKC9b.matrix -pseudo 1 -decimals 1 -2str -origin end -bgfile $RSAT/public_html/data/genomes/Arabidopsis_thaliana.TAIR10.60/oligo-frequencies/2nt_upstream-noorf_Arabidopsis_thaliana.TAIR10.60-ovlp-1str.freq -bg_pseudo 0.01 -return limits -return pval -uth pval 0.001 -i $RSAT/public_html/tmp/www-data/2026/08/17/tmp_sequence_2026-08-17.165959_CAdi27.fasta -seq_format fasta -n score ; Quick counting mode ; Input files ; bg $RSAT/public_html/data/genomes/Arabidopsis_thaliana.TAIR10.60/oligo-frequencies/2nt_upstream-noorf_Arabidopsis_thaliana.TAIR10.60-ovlp-1str.freq ; input $RSAT/public_html/tmp/www-data/2026/08/17/tmp_sequence_2026-08-17.165959_CAdi27.fasta ; Matrix files ; matrix 1 $RSAT/public_html/tmp/www-data/2026/08/17/matrix-scan_2026-08-17.165959_McKC9b.matrix ; Sequence format fasta ; Pseudo counts 1 ; Background model ; Method file ; Markov order 1 ; Strand sensitive ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.34589 ; c 0.15671 ; g 0.15366 ; t 0.34374 ; Thresholds lower upper ; pval NA 0.001 ; Output columns ; 1 seq_id ; 2 ft_type ; 3 ft_name ; 4 strand ; 5 start ; 6 end ; 7 sequence ; 8 weight #seq_id ft_type ft_name strand start end sequence weight Pval ln_Pval sig AT3G06280|AT3G06280 limit START_END D -500 -1 . 0 0 0 0 AT2G16770|BZIP23 limit START_END D -500 -1 . 0 0 0 0 AT5G63200|AT5G63200 limit START_END D -500 -1 . 0 0 0 0 AT5G51390|AT5G51390 limit START_END D -500 -1 . 0 0 0 0 AT2G14750|APK1 limit START_END D -500 -1 . 0 0 0 0 AT5G14350|AT5G14350 limit START_END D -500 -1 . 0 0 0 0 AT1G07527|AT1G07527 limit START_END D -500 -1 . 0 0 0 0 AT4G08535|AT4G08535 limit START_END D -500 -1 . 0 0 0 0 AT5G62430|CDF1 limit START_END D -500 -1 . 0 0 0 0 AT1G08310|AT1G08310 limit START_END D -500 -1 . 0 0 0 0 AT4G11940|ADM limit START_END D -500 -1 . 0 0 0 0 AT3G44780|AT3G44780 limit START_END D -500 -1 . 0 0 0 0 AT5G49138|AT5G49138 limit START_END D -500 -1 . 0 0 0 0 AT5G65615|AT5G65615 limit START_END D -500 -1 . 0 0 0 0 AT5G00770|AT5G00770 limit START_END D -500 -1 . 0 0 0 0 AT1G39060|AT1G39060 limit START_END D -500 -1 . 0 0 0 0 AT5G08805|AT5G08805 limit START_END D -500 -1 . 0 0 0 0 AT4G03480|AT4G03480 limit START_END D -500 -1 . 0 0 0 0 AT1G28370|ERF11 limit START_END D -500 -1 . 0 0 0 0 AT5G52850|PCMP-H31 limit START_END D -500 -1 . 0 0 0 0 AT1G77122|AT1G77122 limit START_END D -500 -1 . 0 0 0 0 AT1G08920|ESL1 limit START_END D -500 -1 . 0 0 0 0 AT1G11690|AT1G11690 limit START_END D -500 -1 . 0 0 0 0 AT3G59710|AT3G59710 limit START_END D -500 -1 . 0 0 0 0 AT3G06280|AT3G06280 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -485 -478 TCTGCCGC 5.3 5.1e-04 -7.581 3.292 AT3G06280|AT3G06280 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -195 -188 GTTCACGC 5.6 3.5e-04 -7.958 3.456 AT3G06280|AT3G06280 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -128 -121 TCTCACGC 5.4 4.2e-04 -7.775 3.377 AT5G63200|AT5G63200 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -372 -365 CTTCCCGA 5.3 5.1e-04 -7.581 3.292 AT2G14750|APK1 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -358 -351 ATTCCCAC 6.5 2.7e-04 -8.217 3.569 AT2G14750|APK1 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -204 -197 AATCACGC 4.8 9.5e-04 -6.959 3.022 AT5G14350|AT5G14350 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -386 -379 TTACCCCC 4.8 8.8e-04 -7.036 3.056 AT5G14350|AT5G14350 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -384 -377 ACCCCCGC 5.2 5.9e-04 -7.435 3.229 AT1G07527|AT1G07527 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -270 -263 TATCCAGC 5.3 5.1e-04 -7.581 3.292 AT4G08535|AT4G08535 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -408 -401 CTTCACGC 5.6 3.5e-04 -7.958 3.456 AT5G62430|CDF1 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -330 -323 ATCCCCGC 7.6 4.7e-05 -9.965 4.328 AT3G44780|AT3G44780 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -97 -90 ATACACGC 5.2 6.7e-04 -7.308 3.174 AT5G49138|AT5G49138 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -135 -128 TCTCCCAC 4.9 8.8e-04 -7.036 3.056 AT5G49138|AT5G49138 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -121 -114 CTTCTCGC 5.7 3.4e-04 -7.987 3.469 AT5G49138|AT5G49138 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -51 -44 GTTCCGGC 5.4 4.2e-04 -7.775 3.377 AT5G65615|AT5G65615 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -485 -478 TCTTCCGC 5.2 5.9e-04 -7.435 3.229 AT5G65615|AT5G65615 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -453 -446 CTTTCCGC 5.4 4.2e-04 -7.775 3.377 AT5G65615|AT5G65615 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -406 -399 TCTCCCTC 4.9 8.0e-04 -7.131 3.097 AT5G00770|AT5G00770 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -250 -243 TATCCCCC 4.9 8.0e-04 -7.131 3.097 AT4G03480|AT4G03480 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -115 -108 CTTCCCTC 5.2 5.9e-04 -7.435 3.229 AT5G52850|PCMP-H31 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -100 -93 CTTCCCTC 5.2 5.9e-04 -7.435 3.229 AT1G77122|AT1G77122 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -352 -345 ATCACCGC 4.8 9.5e-04 -6.959 3.022 AT1G11690|AT1G11690 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -447 -440 TTTACCGC 7.6 4.7e-05 -9.965 4.328 AT1G11690|AT1G11690 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -269 -262 TCTCTCGC 5.4 4.2e-04 -7.775 3.377 AT3G59710|AT3G59710 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -437 -430 TGTCCCGT 5.1 6.7e-04 -7.308 3.174 AT3G06280|AT3G06280 site 5015_E2Fb_Athamap_20091028_ R -485 -478 TCTGCCGC 5.3 5.1e-04 -7.581 3.292 AT3G06280|AT3G06280 site 5015_E2Fb_Athamap_20091028_ R -195 -188 GTTCACGC 5.5 3.6e-04 -7.929 3.444 AT3G06280|AT3G06280 site 5015_E2Fb_Athamap_20091028_ R -128 -121 TCTCACGC 5.3 4.4e-04 -7.729 3.357 AT5G63200|AT5G63200 site 5015_E2Fb_Athamap_20091028_ R -428 -421 TTTCGCGT 4.6 8.2e-04 -7.106 3.086 AT5G63200|AT5G63200 site 5015_E2Fb_Athamap_20091028_ D -372 -365 CTTCCCGA 5.2 5.1e-04 -7.581 3.292 AT2G14750|APK1 site 5015_E2Fb_Athamap_20091028_ D -358 -351 ATTCCCAC 6.3 2.7e-04 -8.217 3.569 AT5G14350|AT5G14350 site 5015_E2Fb_Athamap_20091028_ D -386 -379 TTACCCCC 4.7 7.9e-04 -7.143 3.102 AT5G14350|AT5G14350 site 5015_E2Fb_Athamap_20091028_ D -384 -377 ACCCCCGC 4.8 7.5e-04 -7.195 3.125 AT1G07527|AT1G07527 site 5015_E2Fb_Athamap_20091028_ D -270 -263 TATCCAGC 5.3 4.4e-04 -7.729 3.357 AT4G08535|AT4G08535 site 5015_E2Fb_Athamap_20091028_ D -408 -401 CTTCACGC 5.5 3.6e-04 -7.929 3.444 AT5G62430|CDF1 site 5015_E2Fb_Athamap_20091028_ D -330 -323 ATCCCCGC 7.4 9.3e-05 -9.283 4.032 AT3G44780|AT3G44780 site 5015_E2Fb_Athamap_20091028_ R -97 -90 ATACACGC 4.7 7.9e-04 -7.143 3.102 AT5G49138|AT5G49138 site 5015_E2Fb_Athamap_20091028_ R -135 -128 TCTCCCAC 4.8 7.5e-04 -7.195 3.125 AT5G49138|AT5G49138 site 5015_E2Fb_Athamap_20091028_ R -121 -114 CTTCTCGC 5.5 3.6e-04 -7.929 3.444 AT5G49138|AT5G49138 site 5015_E2Fb_Athamap_20091028_ D -51 -44 GTTCCGGC 5.3 4.4e-04 -7.729 3.357 AT5G65615|AT5G65615 site 5015_E2Fb_Athamap_20091028_ R -485 -478 TCTTCCGC 5.1 5.8e-04 -7.452 3.237 AT5G65615|AT5G65615 site 5015_E2Fb_Athamap_20091028_ R -453 -446 CTTTCCGC 5.3 4.4e-04 -7.729 3.357 AT5G65615|AT5G65615 site 5015_E2Fb_Athamap_20091028_ R -406 -399 TCTCCCTC 4.8 7.5e-04 -7.195 3.125 AT5G00770|AT5G00770 site 5015_E2Fb_Athamap_20091028_ D -250 -243 TATCCCCC 4.9 7.5e-04 -7.195 3.125 AT4G03480|AT4G03480 site 5015_E2Fb_Athamap_20091028_ R -115 -108 CTTCCCTC 5.0 6.5e-04 -7.339 3.187 AT5G52850|PCMP-H31 site 5015_E2Fb_Athamap_20091028_ D -100 -93 CTTCCCTC 5.0 6.5e-04 -7.339 3.187 AT1G11690|AT1G11690 site 5015_E2Fb_Athamap_20091028_ R -447 -440 TTTACCGC 7.8 3.7e-05 -10.205 4.432 AT1G11690|AT1G11690 site 5015_E2Fb_Athamap_20091028_ D -269 -262 TCTCTCGC 5.4 4.4e-04 -7.729 3.357 AT3G59710|AT3G59710 site 5015_E2Fb_Athamap_20091028_ R -437 -430 TGTCCCGT 5.0 6.5e-04 -7.339 3.187 AT3G06280|AT3G06280 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ R -199 -189 TTCACGCGCCG 4.5 9.8e-04 -6.928 3.009 AT5G63200|AT5G63200 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -371 -361 TTCCCGAGTTT 4.7 8.3e-04 -7.094 3.081 AT5G51390|AT5G51390 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -359 -349 TTCACACCATA 5.2 5.0e-04 -7.601 3.301 AT2G14750|APK1 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -357 -347 TTCCCACAAAT 4.9 6.5e-04 -7.339 3.187 AT2G14750|APK1 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -263 -253 CTCGAGCCAAA 5.1 6.0e-04 -7.419 3.222 AT2G14750|APK1 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ R -208 -198 ATCACGCCATA 8.0 4.3e-05 -10.054 4.367 AT5G14350|AT5G14350 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -385 -375 TACCCCCGCTC 4.6 8.3e-04 -7.094 3.081 AT5G14350|AT5G14350 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -383 -373 CCCCCGCTCAT 5.6 3.6e-04 -7.929 3.444 AT1G07527|AT1G07527 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -269 -259 ATCCAGCGACT 4.5 9.8e-04 -6.928 3.009 AT1G07527|AT1G07527 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ R -242 -232 ACCGCGACCAA 4.5 9.8e-04 -6.928 3.009 AT5G62430|CDF1 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -329 -319 TCCCCGCGATG 6.4 1.9e-04 -8.568 3.721 AT5G62430|CDF1 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -310 -300 TACCTACCCAA 4.6 8.3e-04 -7.094 3.081 AT3G44780|AT3G44780 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -425 -415 TTTCCACCAAA 4.6 8.3e-04 -7.094 3.081 AT5G49138|AT5G49138 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -50 -40 TTCCGGCCAAT 8.3 3.1e-05 -10.382 4.509 AT5G65615|AT5G65615 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ R -458 -448 TTCCGCCCCTT 4.7 7.7e-04 -7.169 3.114 AT5G65615|AT5G65615 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ R -457 -447 TTTCCGCCCCT 6.3 2.1e-04 -8.468 3.678 AT5G08805|AT5G08805 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -355 -345 TCCCCTCTCTA 4.7 7.7e-04 -7.169 3.114 AT4G03480|AT4G03480 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ R -119 -109 TTCCCTCCCAG 6.4 1.9e-04 -8.568 3.721 AT5G52850|PCMP-H31 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -99 -89 TTCCCTCCAAC 6.1 2.7e-04 -8.217 3.569 AT1G77122|AT1G77122 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ R -421 -411 TACTCTCCCAA 4.7 7.7e-04 -7.169 3.114 AT1G11690|AT1G11690 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -270 -260 TTCTCTCGCAT 4.9 7.2e-04 -7.236 3.143 ; ; Matrices ; matrix name ncol nrow pseudo Wmin Wmax Wrange ; 1 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ 8 4 0 -11.100 10.500 21.600 a:0.346 c:0.157 g:0.154 t:0.344 ; 2 5015_E2Fb_Athamap_20091028_ 8 4 0 -12.900 10.900 23.800 a:0.346 c:0.157 g:0.154 t:0.344 ; 3 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ 11 4 0 -19.800 12.800 32.600 a:0.346 c:0.157 g:0.154 t:0.344 ; Number of sequences scanned 24 ; Sum of sequence lengths 12000 ; N residues 0 ; Matches per matrix ; matrix name matches scored ; 1 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ 25 0 ; 2 5015_E2Fb_Athamap_20091028_ 24 0 ; 3 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ 21 0 ; TOTAL 70 0 ; Host name rsat ; Job started 2026-08-17.165959 ; Job done 2026-08-17.170001 ; Seconds 0.47 ; user 0.47 ; system 0.06 ; cuser 0.81 ; csystem 0.11