; matrix-scan -v 1 -quick -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/08/17/matrix-scan_2026-08-17.170119_AINzUr.matrix -pseudo 1 -decimals 1 -2str -origin end -bgfile $RSAT/public_html/data/genomes/Arabidopsis_thaliana.TAIR10.60/oligo-frequencies/2nt_upstream-noorf_Arabidopsis_thaliana.TAIR10.60-ovlp-1str.freq -bg_pseudo 0.01 -return limits -return pval -uth pval 0.001 -i $RSAT/public_html/tmp/www-data/2026/08/17/tmp_sequence_2026-08-17.170119_D8aMYB.fasta -seq_format fasta -n score ; Quick counting mode ; Input files ; input $RSAT/public_html/tmp/www-data/2026/08/17/tmp_sequence_2026-08-17.170119_D8aMYB.fasta ; bg $RSAT/public_html/data/genomes/Arabidopsis_thaliana.TAIR10.60/oligo-frequencies/2nt_upstream-noorf_Arabidopsis_thaliana.TAIR10.60-ovlp-1str.freq ; Matrix files ; matrix 1 $RSAT/public_html/tmp/www-data/2026/08/17/matrix-scan_2026-08-17.170119_AINzUr.matrix ; Sequence format fasta ; Pseudo counts 1 ; Background model ; Method file ; Markov order 1 ; Strand sensitive ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.34589 ; c 0.15671 ; g 0.15366 ; t 0.34374 ; Thresholds lower upper ; pval NA 0.001 ; Output columns ; 1 seq_id ; 2 ft_type ; 3 ft_name ; 4 strand ; 5 start ; 6 end ; 7 sequence ; 8 weight #seq_id ft_type ft_name strand start end sequence weight Pval ln_Pval sig AT2G22450|RIBA2 limit START_END D -500 -1 . 0 0 0 0 AT5G66650|AT5G66650 limit START_END D -500 -1 . 0 0 0 0 AT1G16750|AT1G16750 limit START_END D -500 -1 . 0 0 0 0 AT1G24120|ATJ16 limit START_END D -500 -1 . 0 0 0 0 AT2G08390|AT2G08390 limit START_END D -500 -1 . 0 0 0 0 AT3G48425|APE1L limit START_END D -500 -1 . 0 0 0 0 AT3G51930|AT3G51930 limit START_END D -500 -1 . 0 0 0 0 AT3G06225|AT3G06225 limit START_END D -500 -1 . 0 0 0 0 AT5G02140|AT5G02140 limit START_END D -500 -1 . 0 0 0 0 AT5G47230|ERF5 limit START_END D -500 -1 . 0 0 0 0 AT5G09145|AT5G09145 limit START_END D -500 -1 . 0 0 0 0 AT4G22900|AT4G22900 limit START_END D -500 -1 . 0 0 0 0 AT2G39340|SAC3A limit START_END D -500 -1 . 0 0 0 0 AT1G69890|AT1G69890 limit START_END D -500 -1 . 0 0 0 0 AT1G57650|AT1G57650 limit START_END D -500 -1 . 0 0 0 0 AT5G08180|AT5G08180 limit START_END D -500 -1 . 0 0 0 0 AT1G04690|KAB1 limit START_END D -500 -1 . 0 0 0 0 AT1G47500|RBP47C' limit START_END D -500 -1 . 0 0 0 0 AT3G45840|AT3G45840 limit START_END D -500 -1 . 0 0 0 0 AT3G07855|AT3G07855 limit START_END D -500 -1 . 0 0 0 0 AT1G64980|AT1G64980 limit START_END D -500 -1 . 0 0 0 0 AT1G12064|AT1G12064 limit START_END D -500 -1 . 0 0 0 0 AT3G59360|UTR6 limit START_END D -500 -1 . 0 0 0 0 AT1G53800|AT1G53800 limit START_END D -500 -1 . 0 0 0 0 AT2G22450|RIBA2 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -484 -477 ATCACCGC 4.8 9.5e-04 -6.959 3.022 AT2G22450|RIBA2 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -160 -153 CTTCCCGA 5.3 5.1e-04 -7.581 3.292 AT5G66650|AT5G66650 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -366 -359 AATACCGC 5.0 8.0e-04 -7.131 3.097 AT5G66650|AT5G66650 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -260 -253 TTAACCGC 5.3 5.1e-04 -7.581 3.292 AT5G66650|AT5G66650 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -145 -138 TTTCCGGC 7.2 1.0e-04 -9.210 4.000 AT1G16750|AT1G16750 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -400 -393 CTTCCCAC 5.1 6.7e-04 -7.308 3.174 AT1G16750|AT1G16750 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -83 -76 CTTCCCAC 5.1 6.7e-04 -7.308 3.174 AT1G24120|ATJ16 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -89 -82 GTTCACGC 5.6 3.5e-04 -7.958 3.456 AT2G08390|AT2G08390 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -18 -11 ATTCCCGG 6.6 2.6e-04 -8.255 3.585 AT2G08390|AT2G08390 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -17 -10 TTCCCGGC 4.9 8.0e-04 -7.131 3.097 AT3G48425|APE1L site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -401 -394 ATTCCCGC 9.8 8.5e-06 -11.675 5.071 AT3G51930|AT3G51930 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -434 -427 ATTCCCGT 6.8 2.1e-04 -8.468 3.678 AT3G51930|AT3G51930 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -395 -388 TCTCCCAC 4.9 8.8e-04 -7.036 3.056 AT3G06225|AT3G06225 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -383 -376 AATGCCGC 4.7 9.5e-04 -6.959 3.022 AT3G06225|AT3G06225 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -304 -297 TTGCCCTC 4.8 8.8e-04 -7.036 3.056 AT5G02140|AT5G02140 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -59 -52 TTTCCCAC 6.9 2.1e-04 -8.468 3.678 AT5G09145|AT5G09145 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -479 -472 ATGGCCGC 4.7 9.5e-04 -6.959 3.022 AT5G09145|AT5G09145 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -469 -462 ATGCTCGC 5.0 8.0e-04 -7.131 3.097 AT5G09145|AT5G09145 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -297 -290 TATCCTGC 5.3 5.1e-04 -7.581 3.292 AT5G09145|AT5G09145 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -148 -141 TTTCCCGA 7.1 1.4e-04 -8.874 3.854 AT5G09145|AT5G09145 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -83 -76 ACTCCCGT 4.7 9.5e-04 -6.959 3.022 AT5G09145|AT5G09145 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -74 -67 TGTCCCGT 5.1 6.7e-04 -7.308 3.174 AT1G69890|AT1G69890 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -244 -237 TGTCCAGC 5.0 7.4e-04 -7.209 3.131 AT1G69890|AT1G69890 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -73 -66 TTGCCCGT 5.0 7.4e-04 -7.209 3.131 AT1G57650|AT1G57650 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -67 -60 TTGTCCGC 5.1 6.7e-04 -7.308 3.174 AT5G08180|AT5G08180 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -404 -397 ATCCTCGC 4.8 8.8e-04 -7.036 3.056 AT1G04690|KAB1 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ R -429 -422 TTGCCCGT 5.0 7.4e-04 -7.209 3.131 AT3G45840|AT3G45840 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -500 -493 TCTCCGGC 5.2 5.9e-04 -7.435 3.229 AT3G07855|AT3G07855 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -291 -284 AGTCACGC 4.9 8.0e-04 -7.131 3.097 AT3G59360|UTR6 site 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ D -67 -60 TACCCCGC 6.1 2.9e-04 -8.146 3.538 AT2G22450|RIBA2 site 5015_E2Fb_Athamap_20091028_ D -160 -153 CTTCCCGA 5.2 5.1e-04 -7.581 3.292 AT5G66650|AT5G66650 site 5015_E2Fb_Athamap_20091028_ R -366 -359 AATACCGC 4.5 9.4e-04 -6.970 3.027 AT5G66650|AT5G66650 site 5015_E2Fb_Athamap_20091028_ D -260 -253 TTAACCGC 5.3 5.1e-04 -7.581 3.292 AT5G66650|AT5G66650 site 5015_E2Fb_Athamap_20091028_ R -145 -138 TTTCCGGC 7.4 9.3e-05 -9.283 4.032 AT1G16750|AT1G16750 site 5015_E2Fb_Athamap_20091028_ R -400 -393 CTTCCCAC 5.0 6.9e-04 -7.279 3.161 AT1G16750|AT1G16750 site 5015_E2Fb_Athamap_20091028_ R -83 -76 CTTCCCAC 5.0 6.9e-04 -7.279 3.161 AT1G24120|ATJ16 site 5015_E2Fb_Athamap_20091028_ R -89 -82 GTTCACGC 5.5 3.6e-04 -7.929 3.444 AT2G08390|AT2G08390 site 5015_E2Fb_Athamap_20091028_ R -392 -385 TCTCCCCC 4.6 8.2e-04 -7.106 3.086 AT2G08390|AT2G08390 site 5015_E2Fb_Athamap_20091028_ D -18 -11 ATTCCCGG 6.5 2.5e-04 -8.294 3.602 AT2G08390|AT2G08390 site 5015_E2Fb_Athamap_20091028_ D -17 -10 TTCCCGGC 4.9 7.5e-04 -7.195 3.125 AT3G48425|APE1L site 5015_E2Fb_Athamap_20091028_ R -401 -394 ATTCCCGC 10.0 8.5e-06 -11.675 5.071 AT3G51930|AT3G51930 site 5015_E2Fb_Athamap_20091028_ D -434 -427 ATTCCCGT 6.6 2.4e-04 -8.335 3.620 AT3G51930|AT3G51930 site 5015_E2Fb_Athamap_20091028_ D -395 -388 TCTCCCAC 4.8 7.5e-04 -7.195 3.125 AT3G06225|AT3G06225 site 5015_E2Fb_Athamap_20091028_ R -304 -297 TTGCCCTC 4.7 7.9e-04 -7.143 3.102 AT5G02140|AT5G02140 site 5015_E2Fb_Athamap_20091028_ D -59 -52 TTTCCCAC 7.1 1.7e-04 -8.680 3.770 AT5G09145|AT5G09145 site 5015_E2Fb_Athamap_20091028_ R -469 -462 ATGCTCGC 4.5 9.4e-04 -6.970 3.027 AT5G09145|AT5G09145 site 5015_E2Fb_Athamap_20091028_ R -297 -290 TATCCTGC 5.3 5.1e-04 -7.581 3.292 AT5G09145|AT5G09145 site 5015_E2Fb_Athamap_20091028_ R -148 -141 TTTCCCGA 7.3 1.3e-04 -8.948 3.886 AT5G09145|AT5G09145 site 5015_E2Fb_Athamap_20091028_ R -74 -67 TGTCCCGT 5.0 6.5e-04 -7.339 3.187 AT1G69890|AT1G69890 site 5015_E2Fb_Athamap_20091028_ D -244 -237 TGTCCAGC 4.9 6.9e-04 -7.279 3.161 AT1G69890|AT1G69890 site 5015_E2Fb_Athamap_20091028_ R -73 -66 TTGCCCGT 5.0 6.9e-04 -7.279 3.161 AT1G57650|AT1G57650 site 5015_E2Fb_Athamap_20091028_ R -253 -246 TTTAACGC 4.5 9.4e-04 -6.970 3.027 AT1G57650|AT1G57650 site 5015_E2Fb_Athamap_20091028_ R -67 -60 TTGTCCGC 5.1 6.5e-04 -7.339 3.187 AT1G04690|KAB1 site 5015_E2Fb_Athamap_20091028_ R -429 -422 TTGCCCGT 5.0 6.9e-04 -7.279 3.161 AT3G45840|AT3G45840 site 5015_E2Fb_Athamap_20091028_ D -500 -493 TCTCCGGC 5.1 5.8e-04 -7.452 3.237 AT3G07855|AT3G07855 site 5015_E2Fb_Athamap_20091028_ D -291 -284 AGTCACGC 4.5 9.4e-04 -6.970 3.027 AT3G59360|UTR6 site 5015_E2Fb_Athamap_20091028_ D -67 -60 TACCCCGC 6.0 2.9e-04 -8.146 3.538 AT2G22450|RIBA2 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -159 -149 TTCCCGATAAC 5.1 6.0e-04 -7.419 3.222 AT5G66650|AT5G66650 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ R -370 -360 ATACCGCAAAA 4.8 7.2e-04 -7.236 3.143 AT5G66650|AT5G66650 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -259 -249 TAACCGCGCCT 5.1 6.0e-04 -7.419 3.222 AT5G66650|AT5G66650 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -244 -234 ATCCCGTCCTT 7.3 9.0e-05 -9.316 4.046 AT5G66650|AT5G66650 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ R -148 -138 TTTCCGGCATT 4.4 9.8e-04 -6.928 3.009 AT1G16750|AT1G16750 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ R -404 -394 TTCCCACTACA 4.9 7.2e-04 -7.236 3.143 AT1G16750|AT1G16750 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ R -87 -77 TTCCCACAAAA 5.1 5.4e-04 -7.524 3.268 AT1G24120|ATJ16 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ R -93 -83 TTCACGCGAAG 6.1 2.5e-04 -8.294 3.602 AT1G24120|ATJ16 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -92 -82 TTCGCGTGAAC 4.6 8.3e-04 -7.094 3.081 AT1G24120|ATJ16 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -13 -3 CACGCGCCGAT 5.5 3.9e-04 -7.849 3.409 AT3G48425|APE1L site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ R -405 -395 TTCCCGCAGCT 4.6 8.3e-04 -7.094 3.081 AT3G51930|AT3G51930 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -394 -384 CTCCCACCAAT 5.6 3.6e-04 -7.929 3.444 AT5G02140|AT5G02140 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -58 -48 TTCCCACTAAT 6.8 1.5e-04 -8.805 3.824 AT5G47230|ERF5 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ R -362 -352 TAGCAGCCATA 4.4 9.8e-04 -6.928 3.009 AT5G09145|AT5G09145 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ R -272 -262 TACCCTCTCAT 6.2 2.3e-04 -8.377 3.638 AT5G09145|AT5G09145 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ R -87 -77 CTCCCGTCAAT 6.0 2.7e-04 -8.217 3.569 AT4G22900|AT4G22900 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -258 -248 AGCACGCCAAT 5.3 4.6e-04 -7.684 3.337 AT2G39340|SAC3A site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ R -335 -325 ATCCGGCAAAA 4.4 9.8e-04 -6.928 3.009 AT5G08180|AT5G08180 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -287 -277 TTCACTCCAAA 5.1 6.0e-04 -7.419 3.222 AT5G08180|AT5G08180 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -114 -104 GACCCGACAAT 4.8 7.2e-04 -7.236 3.143 AT3G45840|AT3G45840 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -160 -150 ATCACGCGATA 7.4 8.1e-05 -9.421 4.092 AT1G64980|AT1G64980 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ R -407 -397 TTAGCTCCCTA 4.5 9.8e-04 -6.928 3.009 AT1G64980|AT1G64980 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -380 -370 ATCCCACCAAA 7.1 1.1e-04 -9.115 3.959 AT1G64980|AT1G64980 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ R -114 -104 TACACGCTCTG 4.6 8.3e-04 -7.094 3.081 AT3G59360|UTR6 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ D -66 -56 ACCCCGCTACT 4.9 7.2e-04 -7.236 3.143 AT1G53800|AT1G53800 site 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ R -404 -394 TTCGAGCTAAT 6.1 2.5e-04 -8.294 3.602 ; ; Matrices ; matrix name ncol nrow pseudo Wmin Wmax Wrange ; 1 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ 8 4 0 -11.100 10.500 21.600 a:0.346 c:0.157 g:0.154 t:0.344 ; 2 5015_E2Fb_Athamap_20091028_ 8 4 0 -12.900 10.900 23.800 a:0.346 c:0.157 g:0.154 t:0.344 ; 3 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ 11 4 0 -19.800 12.800 32.600 a:0.346 c:0.157 g:0.154 t:0.344 ; Number of sequences scanned 24 ; Sum of sequence lengths 12000 ; N residues 0 ; Matches per matrix ; matrix name matches scored ; 1 5014_E2Fa_Athamap_20091028__E2Fe_Athamap_20091028_ 30 0 ; 2 5015_E2Fb_Athamap_20091028_ 27 0 ; 3 5016_E2Fc_Athamap_20091028__E2Fd_Athamap_20091028_ 26 0 ; TOTAL 83 0 ; Host name rsat ; Job started 2026-08-17.170119 ; Job done 2026-08-17.170120 ; Seconds 0.44 ; user 0.44 ; system 0.04 ; cuser 0.77 ; csystem 0.1