; oligo-analysis  -v 1 -sort -i $RSAT/public_html/tmp/www-data/2026/08/21/tmp_sequence_2026-08-21.210333_k6gByF.fasta.purged -format fasta -lth occ_sig 0 -uth rank 50 -return occ,proba,rank -2str -noov -quick_if_possible -seqtype dna -bg upstream-noorf -org Drosophila_melanogaster -pseudo 0.01 -l 5 -o $RSAT/public_html/tmp/www-data/2026/08/21/oligo-analysis_2026-08-21.210333_lGYiko_5nt.tab
; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. 
; Program version              	1.169
; Quick counting mode          
; Detection of over-represented words (right-tail test)
; Oligomer length              	5
; Input file                   	$RSAT/public_html/tmp/www-data/2026/08/21/tmp_sequence_2026-08-21.210333_k6gByF.fasta.purged
; Input format                 	fasta
; Output file                  	$RSAT/public_html/tmp/www-data/2026/08/21/oligo-analysis_2026-08-21.210333_lGYiko_5nt.tab
; Discard overlapping matches
; Counted on both strands
; 	grouped by pairs of reverse complements
; Background model             	upstream-noorf
; Organism                     	Drosophila_melanogaster
; Background estimation method 	Frequency file
; Expected frequency file      	$RSAT/public_html/data/genomes/Drosophila_melanogaster/oligo-frequencies/5nt_upstream-noorf_Drosophila_melanogaster-noov-2str.freq
; Pseudo-frequency             	0.01
; Pseudo-frequency per oligo   	1.953125e-05
; Sequence type                	DNA
; Nb of sequences              	645
; Sum of sequence lengths      	29991
; discarded residues           	NA (quick mode)	 (other letters than ACGT)
; discarded occurrences        	NA (quick mode)	 (contain discarded residues)
; nb possible positions        	NA (quick mode)
; total oligo occurrences      	27433
; total overlapping occurrences	1182
; total non overlapping occ    	26251
; alphabet size                	4
; nb possible oligomers        	512
; oligomers tested for significance	512
;
; column headers
;	1	seq            	oligomer sequence
;	2	id             	oligomer identifier
;	3	exp_freq       	expected relative frequency
;	4	occ            	observed occurrences
;	5	exp_occ        	expected occurrences
;	6	occ_P          	occurrence probability (binomial)
;	7	occ_E          	E-value for occurrences (binomial)
;	8	occ_sig        	occurrence significance (binomial)
;	9	rank           	rank
;	10	ovl_occ        	number of overlapping occurrences (discarded from the count)
;	11	forbocc        	forbidden positions (to avoid self-overlap)
#seq	id	exp_freq	occ	exp_occ	occ_P	occ_E	occ_sig	rank	ovl_occ	forbocc
cgacg	cgacg|cgtcg	0.0009627585488	75	26.41	8.6e-15	4.4e-12	11.36	1	6	300
cacac	cacac|gtgtg	0.0025945443832	128	71.18	8.3e-10	4.3e-07	6.37	2	64	512
acaca	acaca|tgtgt	0.0031332503571	144	85.95	6.6e-09	3.4e-06	5.47	3	62	576
aacaa	aacaa|ttgtt	0.0052237907751	214	143.30	2e-08	1.0e-05	4.99	4	27	856
ctcgc	ctcgc|gcgag	0.0013018349319	72	35.71	6.1e-08	3.1e-05	4.51	5	0	288
gcgac	gcgac|gtcgc	0.0012072822796	68	33.12	7.2e-08	3.7e-05	4.43	6	0	272
acgcg	acgcg|cgcgt	0.0007794368608	50	21.38	9.1e-08	4.7e-05	4.33	7	4	200
cgcga	cgcga|tcgcg	0.0008540075914	53	23.43	1.1e-07	5.4e-05	4.26	8	8	212
aaaca	aaaca|tgttt	0.0055644078756	221	152.65	1.1e-07	5.8e-05	4.23	9	7	884
agcgg	agcgg|ccgct	0.0013555467169	72	37.19	2.7e-07	1.4e-04	3.87	10	0	288
cgcgc	cgcgc|gcgcg	0.0006966410688	44	19.11	7.6e-07	3.9e-04	3.41	11	24	176
gccgc	gccgc|gcggc	0.0014818855580	75	40.65	8.9e-07	4.5e-04	3.34	12	3	300
cgctc	cgctc|gagcg	0.0013574903913	70	37.24	1.1e-06	5.4e-04	3.26	13	4	280
cggca	cggca|tgccg	0.0015185783395	75	41.66	2.1e-06	1.1e-03	2.97	14	0	300
cgccg	cgccg|cggcg	0.0011727465025	61	32.17	3.8e-06	2.0e-03	2.71	15	2	244
gcagc	gcagc|gctgc	0.0025434399665	110	69.77	5.1e-06	2.6e-03	2.58	16	9	440
gacga	gacga|tcgtc	0.0011352715105	59	31.14	5.6e-06	2.9e-03	2.55	17	1	236
gcaac	gcaac|gttgc	0.0022953370303	101	62.97	6.1e-06	3.1e-03	2.50	18	1	404
ctctc	ctctc|gagag	0.0015272774680	73	41.90	8.3e-06	4.3e-03	2.37	19	21	292
cgaga	cgaga|tctcg	0.0012898884448	64	35.39	9.6e-06	4.9e-03	2.31	20	0	256
caaca	caaca|tgttg	0.0031081722157	125	85.27	3.2e-05	1.6e-02	1.78	21	15	500
cgcac	cgcac|gtgcg	0.0015799463057	72	43.34	4.2e-05	2.1e-02	1.67	22	3	288
aacgg	aacgg|ccgtt	0.0014063666935	65	38.58	6.4e-05	3.3e-02	1.48	23	0	260
cagcg	cagcg|cgctg	0.0016363365688	73	44.89	7e-05	3.6e-02	1.44	24	0	292
cgaaa	cgaaa|tttcg	0.0034747207783	135	95.32	7.2e-05	3.7e-02	1.43	25	0	540
agcag	agcag|ctgct	0.0022055250475	92	60.50	9.7e-05	5.0e-02	1.30	26	6	368
acggc	acggc|gccgt	0.0010380877865	50	28.48	0.00016	8.4e-02	1.08	27	1	200
ctgca	ctgca|tgcag	0.0020067724804	84	55.05	0.00017	8.6e-02	1.06	28	8	336
agagc	agagc|gctct	0.0016891950334	73	46.34	0.00018	9.0e-02	1.04	29	1	292
gacgc	gacgc|gcgtc	0.0008639392940	43	23.70	0.00023	1.2e-01	0.93	30	0	172
agcgc	agcgc|gcgct	0.0011167828996	52	30.64	0.00027	1.4e-01	0.86	31	7	208
acttg	acttg|caagt	0.0022816601989	92	62.59	0.00029	1.5e-01	0.83	32	0	368
agaga	agaga|tctct	0.0019062228812	79	52.29	0.00034	1.7e-01	0.76	33	19	316
gcaca	gcaca|tgtgc	0.0024497169313	97	67.20	0.00037	1.9e-01	0.73	34	0	388
agcga	agcga|tcgct	0.0019503585138	80	53.50	0.00042	2.2e-01	0.66	35	1	320
cactc	cactc|gagtg	0.0017448504928	73	47.87	0.00043	2.2e-01	0.66	36	2	292
gcgaa	gcgaa|ttcgc	0.0021943844742	88	60.20	0.00045	2.3e-01	0.63	37	0	352
acaaa	acaaa|tttgt	0.0055263640032	193	151.60	0.00067	3.4e-01	0.47	38	4	772
cggac	cggac|gtccg	0.0007806694349	38	21.42	0.00076	3.9e-01	0.41	39	0	152
ctcac	ctcac|gtgag	0.0012299663829	54	33.74	0.00079	4.0e-01	0.39	40	3	216
acaac	acaac|gttgt	0.0023624649098	92	64.81	0.00083	4.3e-01	0.37	41	10	368
gagca	gagca|tgctc	0.0018882320405	76	51.80	0.00095	4.9e-01	0.31	42	0	304
gcaga	gcaga|tctgc	0.0019311825059	77	52.98	0.00113	5.8e-01	0.24	43	0	308
cacgc	cacgc|gcgtg	0.0013111740507	56	35.97	0.00118	6.0e-01	0.22	44	3	224
aagtg	aagtg|cactt	0.0029802689537	111	81.76	0.00119	6.1e-01	0.21	45	0	444
aacag	aacag|ctgtt	0.0023952703425	92	65.71	0.00124	6.4e-01	0.20	46	0	368
tcgca	tcgca|tgcga	0.0019170790143	76	52.59	0.00140	7.2e-01	0.14	47	0	304
agtgc	agtgc|gcact	0.0020438445156	80	56.07	0.00151	7.7e-01	0.11	48	1	320
ggcga	ggcga|tcgcc	0.0015201190571	62	41.70	0.00194	9.9e-01	0.00	49	0	248
acaag	acaag|cttgt	0.0019725922536	77	54.11	0.00194	9.9e-01	0.00	50	0	308
; Host name	rsat
; Job started	2026-08-21.210333
; Job done	2026-08-21.210334
; Seconds	0.18
;	user	0.18
;	system	0.01
;	cuser	0.09
;	csystem	0.01
; oligo-analysis  -v 1 -sort -i $RSAT/public_html/tmp/www-data/2026/08/21/tmp_sequence_2026-08-21.210333_k6gByF.fasta.purged -format fasta -lth occ_sig 0 -uth rank 50 -return occ,proba,rank -2str -noov -quick_if_possible -seqtype dna -bg upstream-noorf -org Drosophila_melanogaster -pseudo 0.01 -l 6 -o $RSAT/public_html/tmp/www-data/2026/08/21/oligo-analysis_2026-08-21.210333_lGYiko_6nt.tab
; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. 
; Program version              	1.169
; Quick counting mode          
; Detection of over-represented words (right-tail test)
; Oligomer length              	6
; Input file                   	$RSAT/public_html/tmp/www-data/2026/08/21/tmp_sequence_2026-08-21.210333_k6gByF.fasta.purged
; Input format                 	fasta
; Output file                  	$RSAT/public_html/tmp/www-data/2026/08/21/oligo-analysis_2026-08-21.210333_lGYiko_6nt.tab
; Discard overlapping matches
; Counted on both strands
; 	grouped by pairs of reverse complements
; Background model             	upstream-noorf
; Organism                     	Drosophila_melanogaster
; Background estimation method 	Frequency file
; Expected frequency file      	$RSAT/public_html/data/genomes/Drosophila_melanogaster/oligo-frequencies/6nt_upstream-noorf_Drosophila_melanogaster-noov-2str.freq
; Pseudo-frequency             	0.01
; Pseudo-frequency per oligo   	4.80769230769231e-06
; Sequence type                	DNA
; Nb of sequences              	645
; Sum of sequence lengths      	29991
; discarded residues           	NA (quick mode)	 (other letters than ACGT)
; discarded occurrences        	NA (quick mode)	 (contain discarded residues)
; nb possible positions        	NA (quick mode)
; total oligo occurrences      	26849
; total overlapping occurrences	564
; total non overlapping occ    	26285
; alphabet size                	4
; nb possible oligomers        	2080
; oligomers tested for significance	2080
;
; column headers
;	1	seq            	oligomer sequence
;	2	id             	oligomer identifier
;	3	exp_freq       	expected relative frequency
;	4	occ            	observed occurrences
;	5	exp_occ        	expected occurrences
;	6	occ_P          	occurrence probability (binomial)
;	7	occ_E          	E-value for occurrences (binomial)
;	8	occ_sig        	occurrence significance (binomial)
;	9	rank           	rank
;	10	ovl_occ        	number of overlapping occurrences (discarded from the count)
;	11	forbocc        	forbidden positions (to avoid self-overlap)
#seq	id	exp_freq	occ	exp_occ	occ_P	occ_E	occ_sig	rank	ovl_occ	forbocc
cgtcgc	cgtcgc|gcgacg	0.0002890191982	32	7.76	6.2e-11	1.3e-07	6.89	1	0	160
cacaca	cacaca|tgtgtg	0.0012730251174	78	34.18	9.2e-11	1.9e-07	6.72	2	47	390
acacac	acacac|gtgtgt	0.0010811574699	63	29.03	3.2e-08	6.6e-05	4.18	3	41	315
cgacga	cgacga|tcgtcg	0.0003211511644	29	8.62	3.8e-08	8.0e-05	4.10	4	1	145
aacaaa	aacaaa|tttgtt	0.0023281194572	106	62.51	3.3e-07	6.9e-04	3.16	5	4	530
aaacaa	aaacaa|ttgttt	0.0023713175208	105	63.67	1.3e-06	2.6e-03	2.58	6	8	525
caacaa	caacaa|ttgttg	0.0013316019760	67	35.75	2e-06	4.1e-03	2.39	7	8	335
agcgcg	agcgcg|cgcgct	0.0002422430174	21	6.50	4.9e-06	1.0e-02	1.99	8	0	105
acaaaa	acaaaa|ttttgt	0.0021939993035	96	58.91	5.5e-06	1.1e-02	1.94	9	3	480
cggacg	cggacg|cgtccg	0.0001699223974	17	4.56	6.3e-06	1.3e-02	1.89	10	0	85
gcggca	gcggca|tgccgc	0.0005026399024	32	13.50	1.3e-05	2.6e-02	1.58	11	0	160
cgtcga	cgtcga|tcgacg	0.0002598492496	21	6.98	1.4e-05	2.9e-02	1.54	12	2	105
cgacgc	cgacgc|gcgtcg	0.0002469348532	20	6.63	2.1e-05	4.4e-02	1.36	13	0	100
acgcga	acgcga|tcgcgt	0.0002685457331	21	7.21	2.2e-05	4.6e-02	1.34	14	0	105
ggcgac	ggcgac|gtcgcc	0.0003146110297	23	8.45	2.6e-05	5.4e-02	1.27	15	0	115
cgcgag	cgcgag|ctcgcg	0.0001910356583	17	5.13	2.7e-05	5.6e-02	1.25	16	0	85
agagag	agagag|ctctct	0.0006161207180	35	16.54	5.1e-05	1.1e-01	0.97	17	10	175
gcacac	gcacac|gtgtgc	0.0007458570857	40	20.03	5.4e-05	1.1e-01	0.95	18	0	200
gcgaga	gcgaga|tctcgc	0.0003774058012	25	10.13	5.7e-05	1.2e-01	0.92	19	0	125
acgcgc	acgcgc|gcgcgt	0.0002242576470	18	6.02	5.9e-05	1.2e-01	0.91	20	1	90
cgcgac	cgcgac|gtcgcg	0.0002042107123	17	5.48	6.1e-05	1.3e-01	0.90	21	0	85
cgcaca	cgcaca|tgtgcg	0.0006640106173	36	17.83	0.00010	2.1e-01	0.68	22	0	180
aacggc	aacggc|gccgtt	0.0003494917481	23	9.38	0.00012	2.5e-01	0.60	23	0	115
gaatga	gaatga|tcattc	0.0005273549766	30	14.16	0.00016	3.4e-01	0.47	24	2	150
ctcgca	ctcgca|tgcgag	0.0003805810841	24	10.22	0.00016	3.4e-01	0.47	25	0	120
acgcac	acgcac|gtgcgt	0.0004806024919	28	12.90	0.00018	3.8e-01	0.42	26	2	140
agcagc	agcagc|gctgct	0.0008220164804	41	22.07	0.00020	4.1e-01	0.39	27	2	205
cttcac	cttcac|gtgaag	0.0003394208884	22	9.11	0.00021	4.3e-01	0.37	28	0	110
cgagcg	cgagcg|cgctcg	0.0003184498044	21	8.55	0.00023	4.7e-01	0.33	29	2	105
agcggc	agcggc|gccgct	0.0004140400341	25	11.12	0.00023	4.8e-01	0.32	30	0	125
agcggg	agcggg|cccgct	0.0002738773646	19	7.35	0.00024	4.9e-01	0.31	31	0	95
acggca	acggca|tgccgt	0.0003443259896	22	9.24	0.00025	5.2e-01	0.28	32	0	110
aacaac	aacaac|gttgtt	0.0009996901399	47	26.84	0.00027	5.5e-01	0.26	33	8	235
cgcgcg	cgcgcg|cgcgcg	0.0000937866989	10	2.52	0.00029	6.1e-01	0.21	34	6	50
gcgcga	gcgcga|tcgcgc	0.0002356080982	17	6.33	0.00032	6.6e-01	0.18	35	1	85
acgccg	acgccg|cggcgt	0.0002363426785	17	6.35	0.00033	6.8e-01	0.16	36	0	85
gactgc	gactgc|gcagtc	0.0003756285908	23	10.09	0.00033	6.9e-01	0.16	37	0	115
cgagac	cgagac|gtctcg	0.0001937607145	15	5.20	0.00034	7.1e-01	0.15	38	1	75
agcaac	agcaac|gttgct	0.0007099337371	36	19.06	0.00034	7.2e-01	0.14	39	0	180
ccgctc	ccgctc|gagcgg	0.0003530698653	22	9.48	0.00035	7.3e-01	0.14	40	0	110
cgaaaa	cgaaaa|ttttcg	0.0013300617269	58	35.71	0.00037	7.7e-01	0.11	41	0	290
acgtcg	acgtcg|cgacgt	0.0001988079923	15	5.34	0.00044	9.2e-01	0.04	42	1	75
; Host name	rsat
; Job started	2026-08-21.210334
; Job done	2026-08-21.210334
; Seconds	0.36
;	user	0.36
;	system	0.02
;	cuser	0.12
;	csystem	0.02
; oligo-analysis  -v 1 -sort -i $RSAT/public_html/tmp/www-data/2026/08/21/tmp_sequence_2026-08-21.210333_k6gByF.fasta.purged -format fasta -lth occ_sig 0 -uth rank 50 -return occ,proba,rank -2str -noov -quick_if_possible -seqtype dna -bg upstream-noorf -org Drosophila_melanogaster -pseudo 0.01 -l 7 -o $RSAT/public_html/tmp/www-data/2026/08/21/oligo-analysis_2026-08-21.210333_lGYiko_7nt.tab
; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. 
; Program version              	1.169
; Quick counting mode          
; Detection of over-represented words (right-tail test)
; Oligomer length              	7
; Input file                   	$RSAT/public_html/tmp/www-data/2026/08/21/tmp_sequence_2026-08-21.210333_k6gByF.fasta.purged
; Input format                 	fasta
; Output file                  	$RSAT/public_html/tmp/www-data/2026/08/21/oligo-analysis_2026-08-21.210333_lGYiko_7nt.tab
; Discard overlapping matches
; Counted on both strands
; 	grouped by pairs of reverse complements
; Background model             	upstream-noorf
; Organism                     	Drosophila_melanogaster
; Background estimation method 	Frequency file
; Expected frequency file      	$RSAT/public_html/data/genomes/Drosophila_melanogaster/oligo-frequencies/7nt_upstream-noorf_Drosophila_melanogaster-noov-2str.freq
; Pseudo-frequency             	0.01
; Pseudo-frequency per oligo   	1.220703125e-06
; Sequence type                	DNA
; Nb of sequences              	645
; Sum of sequence lengths      	29991
; discarded residues           	NA (quick mode)	 (other letters than ACGT)
; discarded occurrences        	NA (quick mode)	 (contain discarded residues)
; nb possible positions        	NA (quick mode)
; total oligo occurrences      	26263
; total overlapping occurrences	471
; total non overlapping occ    	25792
; alphabet size                	4
; nb possible oligomers        	8192
; oligomers tested for significance	8192
;
; column headers
;	1	seq            	oligomer sequence
;	2	id             	oligomer identifier
;	3	exp_freq       	expected relative frequency
;	4	occ            	observed occurrences
;	5	exp_occ        	expected occurrences
;	6	occ_P          	occurrence probability (binomial)
;	7	occ_E          	E-value for occurrences (binomial)
;	8	occ_sig        	occurrence significance (binomial)
;	9	rank           	rank
;	10	ovl_occ        	number of overlapping occurrences (discarded from the count)
;	11	forbocc        	forbidden positions (to avoid self-overlap)
#seq	id	exp_freq	occ	exp_occ	occ_P	occ_E	occ_sig	rank	ovl_occ	forbocc
cgcgacg	cgcgacg|cgtcgcg	0.0000513821293	13	1.35	2.3e-09	1.9e-05	4.73	1	0	78
cacacac	cacacac|gtgtgtg	0.0005539929748	42	14.55	3.5e-09	2.9e-05	4.54	2	29	252
aacaaaa	aacaaaa|ttttgtt	0.0009838768710	60	25.84	6.6e-09	5.4e-05	4.27	3	2	360
acacaca	acacaca|tgtgtgt	0.0005979613393	42	15.70	2.8e-08	2.3e-04	3.63	4	30	252
aaacaaa	aaacaaa|tttgttt	0.0011515878264	63	30.24	1.3e-07	1.1e-03	2.97	5	4	378
gcgacga	gcgacga|tcgtcgc	0.0000859303962	13	2.26	7.9e-07	6.4e-03	2.19	6	0	78
acaaaaa	acaaaaa|tttttgt	0.0008903402855	50	23.38	1.2e-06	9.4e-03	2.02	7	2	300
cacacaa	cacacaa|ttgtgtg	0.0003263445727	25	8.57	3.8e-06	3.1e-02	1.51	8	0	150
cgcacac	cgcacac|gtgtgcg	0.0002691595978	22	7.07	5.2e-06	4.3e-02	1.37	9	1	132
gcacaca	gcacaca|tgtgtgc	0.0003821295835	27	10.04	6.8e-06	5.6e-02	1.25	10	0	162
cggacga	cggacga|tcgtccg	0.0000494601445	9	1.30	9.1e-06	7.4e-02	1.13	11	0	54
ggcgacc	ggcgacc|ggtcgcc	0.0000539210472	9	1.42	1.8e-05	1.5e-01	0.84	12	0	54
gagatac	gagatac|gtatctc	0.0000866896987	11	2.28	2.7e-05	2.2e-01	0.66	13	0	66
cgactgc	cgactgc|gcagtcg	0.0001250107504	13	3.28	4e-05	3.3e-01	0.48	14	0	78
acaacaa	acaacaa|ttgttgt	0.0005272275592	31	13.85	4.9e-05	4.0e-01	0.40	15	1	186
cacgcac	cacgcac|gtgcgtg	0.0002113339615	17	5.55	7e-05	5.8e-01	0.24	16	2	102
agcaaca	agcaaca|tgttgct	0.0003466321883	23	9.10	7.9e-05	6.4e-01	0.19	17	1	138
aacagct	aacagct|agctgtt	0.0002150355615	17	5.65	8.6e-05	7.1e-01	0.15	18	2	102
cgcgcga	cgcgcga|tcgcgcg	0.0000387349958	7	1.02	9.2e-05	7.6e-01	0.12	19	1	42
agtgaag	agtgaag|cttcact	0.0001186278632	12	3.12	0.00010	8.3e-01	0.08	20	0	72
gcaacaa	gcaacaa|ttgttgc	0.0003786178091	24	9.94	0.00011	9.0e-01	0.04	21	0	144
; Host name	rsat
; Job started	2026-08-21.210334
; Job done	2026-08-21.210335
; Seconds	0.85
;	user	0.85
;	system	0.02
;	cuser	0.09
;	csystem	0.04
; oligo-analysis  -v 1 -sort -i $RSAT/public_html/tmp/www-data/2026/08/21/tmp_sequence_2026-08-21.210333_k6gByF.fasta.purged -format fasta -lth occ_sig 0 -uth rank 50 -return occ,proba,rank -2str -noov -quick_if_possible -seqtype dna -bg upstream-noorf -org Drosophila_melanogaster -pseudo 0.01 -l 8 -o $RSAT/public_html/tmp/www-data/2026/08/21/oligo-analysis_2026-08-21.210333_lGYiko_8nt.tab
; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. 
; Program version              	1.169
; Quick counting mode          
; Detection of over-represented words (right-tail test)
; Oligomer length              	8
; Input file                   	$RSAT/public_html/tmp/www-data/2026/08/21/tmp_sequence_2026-08-21.210333_k6gByF.fasta.purged
; Input format                 	fasta
; Output file                  	$RSAT/public_html/tmp/www-data/2026/08/21/oligo-analysis_2026-08-21.210333_lGYiko_8nt.tab
; Discard overlapping matches
; Counted on both strands
; 	grouped by pairs of reverse complements
; Background model             	upstream-noorf
; Organism                     	Drosophila_melanogaster
; Background estimation method 	Frequency file
; Expected frequency file      	$RSAT/public_html/data/genomes/Drosophila_melanogaster/oligo-frequencies/8nt_upstream-noorf_Drosophila_melanogaster-noov-2str.freq
; Pseudo-frequency             	0.01
; Pseudo-frequency per oligo   	3.03988326848249e-07
; Sequence type                	DNA
; Nb of sequences              	645
; Sum of sequence lengths      	29991
; discarded residues           	NA (quick mode)	 (other letters than ACGT)
; discarded occurrences        	NA (quick mode)	 (contain discarded residues)
; nb possible positions        	NA (quick mode)
; total oligo occurrences      	25713
; total overlapping occurrences	230
; total non overlapping occ    	25483
; alphabet size                	4
; nb possible oligomers        	32896
; oligomers tested for significance	32896
;
; column headers
;	1	seq            	oligomer sequence
;	2	id             	oligomer identifier
;	3	exp_freq       	expected relative frequency
;	4	occ            	observed occurrences
;	5	exp_occ        	expected occurrences
;	6	occ_P          	occurrence probability (binomial)
;	7	occ_E          	E-value for occurrences (binomial)
;	8	occ_sig        	occurrence significance (binomial)
;	9	rank           	rank
;	10	ovl_occ        	number of overlapping occurrences (discarded from the count)
;	11	forbocc        	forbidden positions (to avoid self-overlap)
#seq	id	exp_freq	occ	exp_occ	occ_P	occ_E	occ_sig	rank	ovl_occ	forbocc
cacacaca	cacacaca|tgtgtgtg	0.0003553206980	33	9.14	8.5e-10	2.8e-05	4.55	1	20	231
aacaaaaa	aacaaaaa|tttttgtt	0.0004122277883	33	10.60	2.8e-08	9.2e-04	3.03	2	0	231
aaacaaaa	aaacaaaa|ttttgttt	0.0005055145987	37	13.00	4e-08	1.3e-03	2.88	3	2	259
acacacac	acacacac|gtgtgtgt	0.0003287893690	28	8.45	8.8e-08	2.9e-03	2.54	4	18	196
acgcgacg	acgcgacg|cgtcgcgt	0.0000166072289	6	0.43	5.8e-06	1.9e-01	0.72	5	0	42
acacagat	acacagat|atctgtgt	0.0000508748846	9	1.31	9.6e-06	3.2e-01	0.50	6	0	63
agcaacaa	agcaacaa|ttgttgct	0.0001701946718	16	4.38	1.5e-05	4.8e-01	0.32	7	0	112
aacaacaa	aacaacaa|ttgttgtt	0.0002973694410	22	7.65	1.7e-05	5.6e-01	0.25	8	0	154
acaaaaaa	acaaaaaa|ttttttgt	0.0003443806777	24	8.86	1.9e-05	6.2e-01	0.21	9	0	168
; Host name	rsat
; Job started	2026-08-21.210335
; Job done	2026-08-21.210339
; Seconds	3.34
;	user	3.34
;	system	0.08
;	cuser	0.19
;	csystem	0.03
