; oligo-analysis -v 1 -sort -i $RSAT/public_html/tmp/www-data/2026/08/21/tmp_sequence_2026-08-21.210333_k6gByF.fasta.purged -format fasta -lth occ_sig 0 -uth rank 50 -return occ,proba,rank -2str -noov -quick_if_possible -seqtype dna -bg upstream-noorf -org Drosophila_melanogaster -pseudo 0.01 -l 8 -o $RSAT/public_html/tmp/www-data/2026/08/21/oligo-analysis_2026-08-21.210333_lGYiko_8nt.tab
; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42.
; Program version 1.169
; Quick counting mode
; Detection of over-represented words (right-tail test)
; Oligomer length 8
; Input file $RSAT/public_html/tmp/www-data/2026/08/21/tmp_sequence_2026-08-21.210333_k6gByF.fasta.purged
; Input format fasta
; Output file $RSAT/public_html/tmp/www-data/2026/08/21/oligo-analysis_2026-08-21.210333_lGYiko_8nt.tab
; Discard overlapping matches
; Counted on both strands
; grouped by pairs of reverse complements
; Background model upstream-noorf
; Organism Drosophila_melanogaster
; Background estimation method Frequency file
; Expected frequency file $RSAT/public_html/data/genomes/Drosophila_melanogaster/oligo-frequencies/8nt_upstream-noorf_Drosophila_melanogaster-noov-2str.freq
; Pseudo-frequency 0.01
; Pseudo-frequency per oligo 3.03988326848249e-07
; Sequence type DNA
; Nb of sequences 645
; Sum of sequence lengths 29991
; discarded residues NA (quick mode) (other letters than ACGT)
; discarded occurrences NA (quick mode) (contain discarded residues)
; nb possible positions NA (quick mode)
; total oligo occurrences 25713
; total overlapping occurrences 230
; total non overlapping occ 25483
; alphabet size 4
; nb possible oligomers 32896
; oligomers tested for significance 32896
;
; column headers
; 1 seq oligomer sequence
; 2 id oligomer identifier
; 3 exp_freq expected relative frequency
; 4 occ observed occurrences
; 5 exp_occ expected occurrences
; 6 occ_P occurrence probability (binomial)
; 7 occ_E E-value for occurrences (binomial)
; 8 occ_sig occurrence significance (binomial)
; 9 rank rank
; 10 ovl_occ number of overlapping occurrences (discarded from the count)
; 11 forbocc forbidden positions (to avoid self-overlap)
#seq id exp_freq occ exp_occ occ_P occ_E occ_sig rank ovl_occ forbocc
cacacaca cacacaca|tgtgtgtg 0.0003553206980 33 9.14 8.5e-10 2.8e-05 4.55 1 20 231
aacaaaaa aacaaaaa|tttttgtt 0.0004122277883 33 10.60 2.8e-08 9.2e-04 3.03 2 0 231
aaacaaaa aaacaaaa|ttttgttt 0.0005055145987 37 13.00 4e-08 1.3e-03 2.88 3 2 259
acacacac acacacac|gtgtgtgt 0.0003287893690 28 8.45 8.8e-08 2.9e-03 2.54 4 18 196
acgcgacg acgcgacg|cgtcgcgt 0.0000166072289 6 0.43 5.8e-06 1.9e-01 0.72 5 0 42
acacagat acacagat|atctgtgt 0.0000508748846 9 1.31 9.6e-06 3.2e-01 0.50 6 0 63
agcaacaa agcaacaa|ttgttgct 0.0001701946718 16 4.38 1.5e-05 4.8e-01 0.32 7 0 112
aacaacaa aacaacaa|ttgttgtt 0.0002973694410 22 7.65 1.7e-05 5.6e-01 0.25 8 0 154
acaaaaaa acaaaaaa|ttttttgt 0.0003443806777 24 8.86 1.9e-05 6.2e-01 0.21 9 0 168
; Host name rsat
; Job started 2026-08-21.210335
; Job done 2026-08-21.210339
; Seconds 3.34
; user 3.34
; system 0.08
; cuser 0.19
; csystem 0.03