; pattern-assembly  -v 1 -subst 1 -toppat 50 -2str -max_asmb_nb 20 -i $RSAT/public_html/tmp/www-data/2026/08/21/oligo-analysis_2026-08-21.211007_7HvI5v.tab -o $RSAT/public_html/tmp/www-data/2026/08/21/oligo-analysis_2026-08-21.211007_7HvI5v.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2026/08/21/oligo-analysis_2026-08-21.211007_7HvI5v.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2026/08/21/oligo-analysis_2026-08-21.211007_7HvI5v.asmb
; Input score column           	8
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	0
; Top number of patterns       	50
; Number of input patterns     	132
; THE ASSEMBLY WAS RESTRICTED TO THE	50 TOP PATTERNS
;
;Number of patterns = 132.	Exceeds top number = 50.	Only the top 50 patterns will be assembled.

; assembly # 1	seed: cacacac	4 assembled patterns	length 8
; alignt	 rev_cpl	score
acacaca.	.tgtgtgt	7.41
acacac..	..gtgtgt	4.42
.cacacac	gtgtgtg.	12.46
.cacaca.	.tgtgtg.	4.16
acacacac	gtgtgtgt	12.46	best consensus

; assembly # 2	seed: ctctctc	4 assembled patterns	length 8
; alignt	 rev_cpl	score
tctctct.	.agagaga	8.05
tctctc..	..gagaga	4.11
.ctctctc	gagagag.	10.59
.ctctct.	.agagag.	9.76
tctctctc	gagagaga	10.59	best consensus

; assembly # 3	seed: aaacaaa	4 assembled patterns	length 8
; alignt	 rev_cpl	score
aaacaaa.	.tttgttt	5.73
aaacaa..	..ttgttt	4.20
.aacaaaa	ttttgtt.	3.70
.aacaaa.	.tttgtt.	1.98
aaacaaaa	ttttgttt	5.73	best consensus

; assembly # 4	seed: agataca	2 assembled patterns	length 7
;alignt	rev_cpl	score
agataca	tgtatct	4.09
agatac.	.gtatct	3.13
agataca	tgtatct	4.09	best consensus

; assembly # 5	seed: cgtcgc	3 assembled patterns	length 8
; alignt	 rev_cpl	score
tcgtcg..	..cgacga	3.20
.cgtcgc.	.gcgacg.	3.73
..gtcgcc	ggcgac..	2.09
tcgtcgcc	ggcgacga	3.73	best consensus

; assembly # 6	seed: agcagc	5 assembled patterns	length 8
; alignt	 rev_cpl	score
cagcagc.	.gctgctg	1.85
cagcag..	..ctgctg	1.54
.agcagc.	.gctgct.	3.12
.agcagca	tgctgct.	1.98
..gcagca	tgctgc..	2.47
cagcagca	tgctgctg	3.12	best consensus

; assembly # 7	seed: cgctctc	6 assembled patterns	length 10
;   alignt	   rev_cpl	score
cgctctc...	...gagagcg	2.73
cgctct....	....agagcg	1.18
..ctctctc.	.gagagag..	10.59
..ctctct..	..agagag..	9.76
...tctctct	agagaga...	8.05
...tctctc.	.gagaga...	4.11
cgctctctct	agagagagcg	10.59	best consensus

; assembly # 8	seed: gaatga	3 assembled patterns	length 8
; alignt	 rev_cpl	score
tgaatg..	..cattca	0.31
.gaatga.	.tcattc.	2.61
..aatgaa	ttcatt..	0.94
tgaatgaa	ttcattca	2.61	best consensus

; assembly # 9	seed: taaata	3 assembled patterns	length 8
; alignt	 rev_cpl	score
taaata..	..tattta	2.50
.aaataaa	tttattt.	2.06
.aaataa.	.ttattt.	1.63
taaataaa	tttattta	2.50	best consensus

; assembly # 10	seed: caacaa	3 assembled patterns	length 8
; alignt	 rev_cpl	score
caacaa..	..ttgttg	2.42
.aacaaaa	ttttgtt.	3.70
.aacaaa.	.tttgtt.	1.98
caacaaaa	ttttgttg	3.70	best consensus

; assembly # 11	seed: ccctctc	5 assembled patterns	length 10
;   alignt	   rev_cpl	score
ccctctc...	...gagaggg	2.33
..ctctctc.	.gagagag..	10.59
..ctctct..	..agagag..	9.76
...tctctct	agagaga...	8.05
...tctctc.	.gagaga...	4.11
ccctctctct	agagagaggg	10.59	best consensus

; assembly # 12	seed: ctgccgc	8 assembled patterns	length 12
;     alignt	     rev_cpl	score
tgctgct.....	.....agcagca	1.98
.gctgct.....	.....agcagc.	3.12
.gctgctg....	....cagcagc.	1.85
..ctgctg....	....cagcag..	1.54
...tgctgc...	...gcagca...	2.47
....gctgcc..	..ggcagc....	1.44
.....ctgccgc	gcggcag.....	2.30
......tgccgc	gcggca......	0.01
tgctgctgccgc	gcggcagcagca	3.12	best consensus

; assembly # 13	seed: tacata	1 assembled patterns	length 6
;alignt	rev_cpl	score
tacata	tatgta	1.93
tacata	tatgta	1.93	best consensus

; assembly # 14	seed: cgcacac	5 assembled patterns	length 10
;   alignt	   rev_cpl	score
cgcacac...	...gtgtgcg	1.82
..cacacac.	.gtgtgtg..	12.46
..cacaca..	..tgtgtg..	4.16
...acacaca	tgtgtgt...	7.41
...acacac.	.gtgtgt...	4.42
cgcacacaca	tgtgtgtgcg	12.46	best consensus

; assembly # 15	seed: ggcgacc	2 assembled patterns	length 7
;alignt	rev_cpl	score
ggcgac.	.gtcgcc	2.09
ggcgacc	ggtcgcc	1.80
ggcgacc	ggtcgcc	2.09	best consensus

; assembly # 16	seed: cagcga	1 assembled patterns	length 6
;alignt	rev_cpl	score
cagcga	tcgctg	1.17
cagcga	tcgctg	1.17	best consensus

; assembly # 17	seed: caagtg	1 assembled patterns	length 6
;alignt	rev_cpl	score
caagtg	cacttg	0.80
caagtg	cacttg	0.80	best consensus

; assembly # 18	seed: gccaac	1 assembled patterns	length 6
;alignt	rev_cpl	score
gccaac	gttggc	0.73
gccaac	gttggc	0.73	best consensus

; assembly # 19	seed: ggaaaa	1 assembled patterns	length 6
;alignt	rev_cpl	score
ggaaaa	ttttcc	0.71
ggaaaa	ttttcc	0.71	best consensus

; assembly # 20	seed: taatta	1 assembled patterns	length 6
;alignt	rev_cpl	score
taatta	taatta	0.50
taatta	taatta	0.50	best consensus
; Maximal number of assemblies is reached (20). Remaining patterns: 6.
; Host name	rsat
; Job started	2026-08-21.211013
; Job done	2026-08-21.211018
; Seconds	4.59
;	user	4.6
;	system	0.01
;	cuser	0
;	csystem	0