; oligo-analysis -v 1 -sort -i $RSAT/public_html/tmp/www-data/2026/08/21/tmp_sequence_2026-08-21.211007_kj2mwo.fasta.purged -format fasta -lth occ_sig 0 -uth rank 50 -return occ,proba,rank -2str -noov -quick_if_possible -seqtype dna -markov 2 -pseudo 0.01 -l 8 -o $RSAT/public_html/tmp/www-data/2026/08/21/oligo-analysis_2026-08-21.211007_7HvI5v_8nt.tab
; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42.
; Program version 1.169
; Quick counting mode
; Detection of over-represented words (right-tail test)
; Oligomer length 8
; Input file $RSAT/public_html/tmp/www-data/2026/08/21/tmp_sequence_2026-08-21.211007_kj2mwo.fasta.purged
; Input format fasta
; Output file $RSAT/public_html/tmp/www-data/2026/08/21/oligo-analysis_2026-08-21.211007_7HvI5v_8nt.tab
; Discard overlapping matches
; Counted on both strands
; grouped by pairs of reverse complements
; Background model Markov
; Background estimation method Markov model estimated from input sequences
; Markov chain order 2
; Pseudo-frequency 0.01
; Pseudo-frequency per oligo 3.03988326848249e-07
; Sequence type DNA
; Nb of sequences 37
; Sum of sequence lengths 45655
; discarded residues NA (quick mode) (other letters than ACGT)
; discarded occurrences NA (quick mode) (contain discarded residues)
; nb possible positions NA (quick mode)
; total oligo occurrences 45398
; total overlapping occurrences 473
; total non overlapping occ 44925
; alphabet size 4
; nb possible oligomers 32896
; oligomers tested for significance 20886
; Sequences:
; chr2R:12374957-12377245(.) 2288
; chr3L:19845033-19848421(.) 3388
; chr3R:9263708-9264530(.) 822
; chrX:12496696-12497519(.) 823
; chrX:7195637-7196623(.) 986
; chrX:7225872-7226648(.) 776
; chr3L:14550559-14551321(.) 762
; chr3L:5975670-5977117(.) 1447
; chr3L:21034239-21035187(.) 948
; chr3L:21058520-21059519(.) 999
; chr3L:21067506-21068157(.) 651
; chr3R:4196948-4197885(.) 937
; chr2R:21871562-21872466(.) 904
; chr2L:14688433-14689698(.) 1265
; chr2R:8161000-8161640(.) 640
; chrX:22854575-22855626(.) 1051
; chr3R:14740504-14741806(.) 1302
; chr3R:14749205-14749940(.) 735
; chr2L:8898214-8899277(.) 1063
; chr2R:12978871-12981585(.) 2714
; chr3L:1947429-1947995(.) 566
; chr2L:20757615-20759169(.) 1554
; chr2L:20759686-20760643(.) 957
; chr3L:21129679-21131795(.) 2116
; chr3L:21099861-21100280(.) 419
; chr3L:2766018-2767173(.) 1155
; chr3L:11707848-11708598(.) 750
; chr2R:18611474-18612076(.) 602
; chr2R:18582454-18583873(.) 1419
; chr2R:20581564-20582738(.) 1174
; chr3L:10659246-10661255(.) 2009
; chrX:15162354-15163474(.) 1120
; chr3L:3416943-3419182(.) 2239
; chr3L:18625845-18626329(.) 484
; chr3L:18640156-18641658(.) 1502
; chr3R:28584754-28586443(.) 1689
; chr3L:11196886-11198285(.) 1399
;
; column headers
; 1 seq oligomer sequence
; 2 id oligomer identifier
; 3 exp_freq expected relative frequency
; 4 occ observed occurrences
; 5 exp_occ expected occurrences
; 6 occ_P occurrence probability (binomial)
; 7 occ_E E-value for occurrences (binomial)
; 8 occ_sig occurrence significance (binomial)
; 9 rank rank
; 10 ovl_occ number of overlapping occurrences (discarded from the count)
; 11 forbocc forbidden positions (to avoid self-overlap)
#seq id exp_freq occ exp_occ occ_P occ_E occ_sig rank ovl_occ forbocc
cacacaca cacacaca|tgtgtgtg 0.0001020016977 40 4.63 5.6e-24 1.2e-19 18.93 1 33 280
acacacac acacacac|gtgtgtgt 0.0000848281677 32 3.85 5e-19 1.0e-14 13.98 2 32 224
gagagaga gagagaga|tctctctc 0.0000482166807 24 2.19 2.9e-17 6.0e-13 12.22 3 18 168
agagagag agagagag|ctctctct 0.0000477366297 19 2.17 2.5e-12 5.3e-08 7.28 4 24 133
aaacaaaa aaacaaaa|ttttgttt 0.0003135479667 46 14.23 1.9e-11 4.0e-07 6.40 5 2 322
aacaacaa aacaacaa|ttgttgtt 0.0001167227007 25 5.30 5.1e-10 1.1e-05 4.97 6 0 175
agagagcg agagagcg|cgctctct 0.0000426840657 14 1.94 2e-08 4.2e-04 3.38 7 0 98
agcaacaa agcaacaa|ttgttgct 0.0000760619157 18 3.45 2.9e-08 6.1e-04 3.21 8 0 126
caacaaca caacaaca|tgttgttg 0.0000765248397 18 3.47 3.2e-08 6.7e-04 3.17 9 3 126
acgcacac acgcacac|gtgtgcgt 0.0000400911567 13 1.82 7.2e-08 1.5e-03 2.82 10 1 91
cacgcaca cacgcaca|tgtgcgtg 0.0000481071867 14 2.18 8.5e-08 1.8e-03 2.75 11 1 98
gcacacac gcacacac|gtgtgtgc 0.0000744698967 17 3.38 1.2e-07 2.4e-03 2.62 12 0 119
cagataca cagataca|tgtatctg 0.0000358376217 12 1.63 1.6e-07 3.4e-03 2.47 13 0 84
cagcaaca cagcaaca|tgttgctg 0.0000597255297 15 2.71 1.9e-07 4.0e-03 2.40 14 1 105
aacaaaaa aacaaaaa|tttttgtt 0.0003135479667 37 14.23 3.6e-07 7.4e-03 2.13 15 0 259
aagagaga aagagaga|tctctctt 0.0000571798437 14 2.60 6.5e-07 1.4e-02 1.87 16 0 98
tatacata tatacata|tatgtata 0.0000418932537 12 1.90 8.2e-07 1.7e-02 1.77 17 0 84
agcagcaa agcagcaa|ttgctgct 0.0000595239657 14 2.70 1e-06 2.2e-02 1.67 18 0 98
gcagcagc gcagcagc|gctgctgc 0.0000429653247 12 1.95 1.1e-06 2.2e-02 1.66 19 1 84
aaagagag aaagagag|ctctcttt 0.0000789927117 16 3.59 1.2e-06 2.6e-02 1.58 20 0 112
cgcacaca cgcacaca|tgtgtgcg 0.0000722512077 15 3.28 2e-06 4.1e-02 1.39 21 0 105
gagagagc gagagagc|gctctctc 0.0000475815957 12 2.16 3e-06 6.2e-02 1.21 22 0 84
acacgcac acacgcac|gtgcgtgt 0.0000400911567 11 1.82 3.5e-06 7.2e-02 1.14 23 0 77
gaaagaga gaaagaga|tctctttc 0.0000590082747 13 2.68 5e-06 1.0e-01 0.98 24 0 91
ggcagcga ggcagcga|tcgctgcc 0.0000339863217 10 1.54 5.2e-06 1.1e-01 0.96 25 0 70
cacacacg cacacacg|cgtgtgtg 0.0000512456847 12 2.33 6.2e-06 1.3e-01 0.89 26 0 84
cctctctc cctctctc|gagagagg 0.0000273023367 9 1.24 6.3e-06 1.3e-01 0.88 27 0 63
ctagctag ctagctag|ctagctag 0.0000026833642 4 0.12 8.3e-06 1.7e-01 0.76 28 0 28
acgccgac acgccgac|gtcggcgt 0.0000153611745 7 0.70 8.7e-06 1.8e-01 0.74 29 0 49
gagagcga gagagcga|tcgctctc 0.0000451949037 11 2.05 1e-05 2.2e-01 0.66 30 0 77
cgagagag cgagagag|ctctctcg 0.0000454813107 11 2.06 1.1e-05 2.3e-01 0.63 31 0 77
acaacaac acaacaac|gttgttgt 0.0000637767087 13 2.90 1.1e-05 2.3e-01 0.63 32 0 91
cagcagca cagcagca|tgctgctg 0.0000467047527 11 2.12 1.4e-05 3.0e-01 0.53 33 1 77
gcaacaac gcaacaac|gttgttgc 0.0000562273647 12 2.55 1.5e-05 3.2e-01 0.49 34 0 84
taaataaa taaataaa|tttattta 0.0001316903127 19 5.98 1.7e-05 3.5e-01 0.46 35 0 133
agagaggg agagaggg|ccctctct 0.0000239520777 8 1.09 1.9e-05 3.9e-01 0.41 36 0 56
taaacaaa taaacaaa|tttgttta 0.0001450360077 20 6.58 1.9e-05 4.0e-01 0.40 37 0 140
ttaattaa ttaattaa|ttaattaa 0.0000316136293 9 1.44 2e-05 4.1e-01 0.39 38 0 63
cgcttggc cgcttggc|gccaagcg 0.0000320123607 9 1.45 2.2e-05 4.5e-01 0.34 39 0 63
ccccctcc ccccctcc|ggaggggg 0.0000119114403 6 0.54 2.2e-05 4.6e-01 0.34 40 0 42
gcggcagc gcggcagc|gctgccgc 0.0000326222007 9 1.48 2.5e-05 5.2e-01 0.28 41 1 63
ccgacgtc ccgacgtc|gacgtcgg 0.0000073502430 5 0.33 2.6e-05 5.5e-01 0.26 42 1 35
agatacac agatacac|gtgtatct 0.0000330411687 9 1.50 2.8e-05 5.8e-01 0.24 43 0 63
aaaacaaa aaaacaaa|tttgtttt 0.0003135479667 32 14.23 3.5e-05 7.3e-01 0.14 44 3 224
cggcgacc cggcgacc|ggtcgccg 0.0000129842538 6 0.59 3.5e-05 7.4e-01 0.13 45 0 42
atgaatga atgaatga|tcattcat 0.0000192029289 7 0.87 3.6e-05 7.4e-01 0.13 46 1 49
ccttttcc ccttttcc|ggaaaagg 0.0000349488987 9 1.59 4.3e-05 8.9e-01 0.05 47 0 63
cgctgccg cgctgccg|cggcagcg 0.0000270540447 8 1.23 4.3e-05 9.1e-01 0.04 48 0 56
gcagcaac gcagcaac|gttgctgc 0.0000439643337 10 2.00 4.6e-05 9.5e-01 0.02 49 0 70
; Host name rsat
; Job started 2026-08-21.211010
; Job done 2026-08-21.211013
; Seconds 3.44
; user 3.44
; system 0.07
; cuser 0.18
; csystem 0.02