RSAT - Supported organisms

RSAT instance: rsat-plants

Organisms supported: 51

Group specificity: Plants

ID taxid nb source last_update data taxonomy
Aegilops_tauschii.ASM34733v1.29 1 ensemblgenomes 2015-11-13.092128 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;Liliopsida;Poales;Poaceae;BEP clade;Pooideae;Triticeae;Aegilops;Aegilops tauschii
Amborella_trichopoda.AMTR1.0.29 2 ensemblgenomes 2015-11-14.081455 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;basal Magnoliophyta;Amborellales;Amborellaceae;Amborella;Amborella trichopoda
Arabidopsis_lyrata.v.1.0.29 3 ensemblgenomes 2015-11-14.142136 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;eudicotyledons;Gunneridae;Pentapetalae;rosids;malvids;Brassicales;Brassicaceae;Camelineae;Arabidopsis;Arabidopsis lyrata
Arabidopsis_thaliana.TAIR10.29 4 ensemblgenomes 2015-11-14.165906 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;eudicotyledons;Gunneridae;Pentapetalae;rosids;malvids;Brassicales;Brassicaceae;Camelineae;Arabidopsis;Arabidopsis thaliana
Beta_vulgaris.RefBeet-1.2.2.32 5 ensemblgenomes 2016-08-04.104317 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;eudicotyledons;Gunneridae;Pentapetalae;Caryophyllales;Amaranthaceae;Beta;Beta vulgaris
Brachypodium_distachyon.v1.0.29 6 ensemblgenomes 2015-11-14.190016 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;Liliopsida;Poales;Poaceae;BEP clade;Pooideae;Brachypodieae;Brachypodium;Brachypodium distachyon
Brassica_napus.AST_PRJEB5043_v1.32 7 ensemblgenomes 2016-08-04.114531 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;eudicotyledons;Gunneridae;Pentapetalae;rosids;malvids;Brassicales;Brassicaceae;Brassiceae;Brassica;Brassica napus
Brassica_oleracea.v2.1.29 8 ensemblgenomes 2015-11-14.220823 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;eudicotyledons;Gunneridae;Pentapetalae;rosids;malvids;Brassicales;Brassicaceae;Brassiceae;Brassica;Brassica oleracea
Brassica_rapa.IVFCAASv1.29 9 ensemblgenomes 2015-11-15.033754 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;eudicotyledons;Gunneridae;Pentapetalae;rosids;malvids;Brassicales;Brassicaceae;Brassiceae;Brassica;Brassica rapa
Chlamydomonas_reinhardtii.v3.1.29 10 ensemblgenomes 2015-11-15.071235 data Eukaryota;Viridiplantae;Chlorophyta;Chlorophyceae;Chlamydomonadales;Chlamydomonadaceae;Chlamydomonas;Chlamydomonas reinhardtii
Corchorus_capsularis.CCACVL1_1.0.37 11 ensemblgenomes 2017-09-14.083714 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;eudicotyledons;Gunneridae;Pentapetalae;rosids;malvids;Malvales;Malvaceae;Grewioideae;Apeibeae;Corchorus;Corchorus capsularis
Escherichia_coli_K_12_substr__MG1655_uid57779 511145 12 NCBI 2017-11-24.133523 data Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia
Glycine_max.V1.0.29 13 ensemblgenomes 2015-11-15.085547 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;eudicotyledons;Gunneridae;Pentapetalae;rosids;fabids;Fabales;Fabaceae;Papilionoideae;Phaseoleae;Glycine;
Glycine_max.Wm82.a2.v1.JGI 14 JGI 2016-07-26.232838 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;eudicotyledons;Gunneridae;Pentapetalae;rosids;fabids;Fabales;Fabaceae;Papilionoideae;Phaseoleae;Glycine;
Hordeum_vulgare.ASM32608v1.35 15 ensemblgenomes 2017-05-30.130856 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;Liliopsida;Poales;Poaceae;BEP clade;Pooideae;Triticeae;Hordeum;Hordeum vulgare
Hordeum_vulgare.HarunaNijo.20151026.NIAS 16 NIAS 2016-07-27.093049 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;Liliopsida;Poales;Poaceae;BEP clade;Pooideae;Triticeae;Hordeum;Hordeum vulgare
Hordeum_vulgare.IBSCv2.36 17 ensemblgenomes 2017-06-21.154024 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;Liliopsida;Poales;Poaceae;BOP clade;Pooideae;Triticodae;Triticeae;Hordeinae;Hordeum;Hordeum vulgare
Leersia_perrieri.Lperr_V1.4.29 18 ensemblgenomes 2015-11-17.033351 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;Liliopsida;Poales;Poaceae;BEP clade;Ehrhartoideae;Oryzeae;Leersia;Leersia perrieri
Medicago_truncatula.MedtrA17_4.0.29 19 ensemblgenomes 2015-11-17.064740 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;eudicotyledons;Gunneridae;Pentapetalae;rosids;fabids;Fabales;Fabaceae;Papilionoideae;Trifolieae;Medicago;Medicago truncatula
Musa_acuminata.MA1.29 20 ensemblgenomes 2015-11-17.114607 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;Liliopsida;Zingiberales;Musaceae;Musa;Musa acuminata
Oryza_barthii.Obart_v1.0.29 21 ensemblgenomes 2015-11-17.161639 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;Liliopsida;Poales;Poaceae;BEP clade;Ehrhartoideae;Oryzeae;Oryza;Oryza barthii
Oryza_brachyantha.Oryza_brachyantha.v1.4b.29 22 ensemblgenomes 2015-11-17.195657 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;Liliopsida;Poales;Poaceae;BEP clade;Ehrhartoideae;Oryzeae;Oryza;Oryza brachyantha
Oryza_glaberrima.AGI1.1.29 23 ensemblgenomes 2015-11-17.230227 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;Liliopsida;Poales;Poaceae;BEP clade;Ehrhartoideae;Oryzeae;Oryza;Oryza glaberrima
Oryza_glumaepatula.ALNU02000000.29 24 ensemblgenomes 2015-11-18.034745 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;Liliopsida;Poales;Poaceae;BEP clade;Ehrhartoideae;Oryzeae;Oryza;Oryza glumipatula
Oryza_indica.ASM465v1.29 25 ensemblgenomes 2015-11-19.034521 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;Liliopsida;Poales;Poaceae;BEP clade;Ehrhartoideae;Oryzeae;Oryza;Oryza sativa
Oryza_longistaminata.O_longistaminata_v1.0.30 26 ensemblgenomes 2015-12-28.112609 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;Liliopsida;Poales;Poaceae;BEP clade;Ehrhartoideae;Oryzeae;Oryza;Oryza longistaminata
Oryza_meridionalis.Oryza_meridionalis_v1.3.29 27 ensemblgenomes 2015-11-18.110938 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;Liliopsida;Poales;Poaceae;BEP clade;Ehrhartoideae;Oryzeae;Oryza;Oryza meridionalis
Oryza_nivara.AWHD00000000.29 28 ensemblgenomes 2015-11-18.143728 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;Liliopsida;Poales;Poaceae;BEP clade;Ehrhartoideae;Oryzeae;Oryza;Oryza nivara
Oryza_punctata.AVCL00000000.29 29 ensemblgenomes 2015-11-18.185059 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;Liliopsida;Poales;Poaceae;BEP clade;Ehrhartoideae;Oryzeae;Oryza;Oryza punctata
Oryza_rufipogon.PRJEB4137.29 30 ensemblgenomes 2015-11-18.233046 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;Liliopsida;Poales;Poaceae;BEP clade;Ehrhartoideae;Oryzeae;Oryza;Oryza rufipogon
Oryza_sativa.IRGSP-1.0.29 31 ensemblgenomes 2015-11-19.095540 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;Liliopsida;Poales;Poaceae;BEP clade;Ehrhartoideae;Oryzeae;Oryza;Oryza sativa
Ostreococcus_lucimarinus.ASM9206v1.29 32 ensemblgenomes 2015-11-19.153354 data Eukaryota;Viridiplantae;Chlorophyta;prasinophytes;Mamiellophyceae;Mamiellales;Bathycoccaceae;Ostreococcus;
Phaseolus_vulgaris.G19833.218.v1.JGI 33 JGI 2016-07-26.161618 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;eudicotyledons;Gunneridae;Pentapetalae;rosids;fabids;Fabales;Fabaceae;Papilionoideae;Phaseoleae;Phaseolus;Phaseolus vulgaris
Physcomitrella_patens.ASM242v1.29 34 ensemblgenomes 2015-11-19.155732 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Bryophyta;Bryophytina;Bryopsida;Funariidae;Funariales;Funariaceae;Physcomitrella;Physcomitrella patens
Populus_trichocarpa.JGI2.0.29 35 ensemblgenomes 2015-11-19.203337 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;eudicotyledons;Gunneridae;Pentapetalae;rosids;fabids;Malpighiales;Salicaceae;Saliceae;Populus;Populus trichocarpa
Prunus_persica.298.v2.1.JGI 36 JGI 2017-04-15.103354 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;eudicotyledons;Gunneridae;Pentapetalae;rosids;fabids;Rosales;Rosaceae;Maloideae;Amygdaleae;Prunus;Prunus persica
Prunus_persica.Prupe1_0.29 37 ensemblgenomes 2015-11-20.010546 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;eudicotyledons;Gunneridae;Pentapetalae;rosids;fabids;Rosales;Rosaceae;Maloideae;Amygdaleae;Prunus;Prunus persica
Prunus_persica_GCF_000346465.2_Prunus_persica_NCBIv2 3760 38 NCBI-Refseq 2017-05-04.101933 data Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Saccharomyces_cerevisiae 4932 39 NCBI 2017-11-24.133345 data Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Selaginella_moellendorffii.v1.0.29 40 ensemblgenomes 2015-11-20.035202 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Lycopodiidae;Selaginellales;Selaginellaceae;Selaginella;Selaginella moellendorffii
Setaria_italica.JGIv2.0.29 41 ensemblgenomes 2015-11-20.063655 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;Liliopsida;Poales;Poaceae;PACMAD clade;Panicoideae;Paniceae;Setaria;Setaria italica
Solanum_lycopersicum.SL2.50.29 42 ensemblgenomes 2015-11-20.110611 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;eudicotyledons;Gunneridae;Pentapetalae;asterids;lamiids;Solanales;Solanaceae;Solanoideae;Solaneae;Solanum;
Solanum_tuberosum.SolTub_3.0.29 43 ensemblgenomes 2015-11-20.183148 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;eudicotyledons;Gunneridae;Pentapetalae;asterids;lamiids;Solanales;Solanaceae;Solanoideae;Solaneae;Solanum;Solanum tuberosum
Sorghum_bicolor.Sorghum_bicolor_v2.36 44 ensemblgenomes 2017-06-21.122643 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;Liliopsida;Poales;Poaceae;PACMAD clade;Panicoideae;Andropogonodae;Andropogoneae;Sorghinae;Sorghum;Sorghum bicolor
Theobroma_cacao.Theobroma_cacao_20110822.29 45 ensemblgenomes 2015-11-21.194057 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;eudicotyledons;Gunneridae;Pentapetalae;rosids;malvids;Malvales;Malvaceae;Byttnerioideae;Theobroma;Theobroma cacao
Trifolium_pratense.Trpr.32 46 ensemblgenomes 2016-08-04.145630 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;eudicotyledons;Gunneridae;Pentapetalae;rosids;fabids;Fabales;Fabaceae;Papilionoideae;Trifolieae;Trifolium;Trifolium pratense
Triticum_aestivum.TGACv1.32 47 ensemblgenomes 2016-08-04.170735 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;Liliopsida;Poales;Poaceae;BEP clade;Pooideae;Triticeae;Triticum;Triticum aestivum
Triticum_urartu.ASM34745v1.29 48 ensemblgenomes 2015-11-24.102213 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;Liliopsida;Poales;Poaceae;BEP clade;Pooideae;Triticeae;Triticum;Triticum urartu
Vitis_vinifera.IGGP_12x.29 49 ensemblgenomes 2015-11-25.120407 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;eudicotyledons;Gunneridae;Pentapetalae;rosids;Vitales;Vitaceae;Vitis;Vitis vinifera
Zea_mays.AGPv3.29 50 ensemblgenomes 2017-03-30.102440 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;Liliopsida;Poales;Poaceae;PACMAD clade;Panicoideae;Andropogoneae;Zea;Zea mays
Zea_mays.AGPv4.35 51 ensemblgenomes 2017-04-27.141241 data Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;Liliopsida;Poales;Poaceae;PACMAD clade;Panicoideae;Andropogoneae;Zea;Zea mays