RSAT - peak-motifs result

Analysis: N9_vg20 (03/04/2025 11:10)

peak-motifs  -v 1 -title N9_vg20 -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: tgctgagtcagca (sig=8.71; e-value=1.9e-09) RC: tgctgactcagca oligos_6nt_mkv2_m2 assembly: caggggt (sig=4.74; e-value=1.8e-05) RC: acccctg oligos_6nt_mkv2_m3 assembly: aaaaggag (sig=3.98; e-value=0.0001) RC: ctcctttt oligos_6nt_mkv2_m4 assembly: tgctgactaag (sig=6.91; e-value=1.2e-07) RC: cttagtcagca oligos_6nt_mkv2_m5 assembly: gcttac (sig=0.66; e-value=0.22) RC: gtaagc	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: gctgagtcagca (sig=14.87; e-value=1.3e-15) RC: tgctgactcagc oligos_7nt_mkv2_m2 assembly: tgactaagc (sig=7.88; e-value=1.3e-08) RC: gcttagtca oligos_7nt_mkv2_m3 assembly: agtcatcat (sig=5.31; e-value=4.9e-06) RC: atgatgact oligos_7nt_mkv2_m4 assembly: gaaaaggagg (sig=3.96; e-value=0.00011) RC: cctccttttc oligos_7nt_mkv2_m5 assembly: agtaagc (sig=3.12; e-value=0.00076) RC: gcttact	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=8.71; evalue=1.9e-09 mwtGCTkAsTCAGCAwy RWTGCTGASTMAGCAWK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 47 (31.33%) Max nb of predicted sites per peak: 4  (ChrIV_A_nidulans_FGSC_A4:624397-624497(.)) Mean nb of predicted sites per peak: 1.89	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv2_m2	k-mer sig=4.74; evalue=1.8e-05 ayCAGGGGytr YARCCCCTGRT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 23 (15.33%) Max nb of predicted sites per peak: 2  (ChrVIII_A_nidulans_FGSC_A4:3628825-3628925(.)) Mean nb of predicted sites per peak: 1.09	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv2_m3	k-mer sig=3.98; evalue=0.0001 rgaAAAGGAGgs SCCTCCTTTTCY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 18 (12.00%) Max nb of predicted sites per peak: 5  (ChrII_A_nidulans_FGSC_A4:3411624-3411724(.)) Mean nb of predicted sites per peak: 1.39	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv2_m4	k-mer sig=6.91; evalue=1.2e-07 mwTGCTGACTmAkcr YGMTKAGTCAGCAWK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 50 (33.33%) Max nb of predicted sites per peak: 3  (ChrV_A_nidulans_FGSC_A4:3331029-3331129(.)) Mean nb of predicted sites per peak: 1.84	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv2_m5	k-mer sig=0.66; evalue=0.22 twGCTTACTa TAGTAAGCWA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 20 (13.33%) Max nb of predicted sites per peak: 3  (ChrI_A_nidulans_FGSC_A4:3272939-3273039(.)) Mean nb of predicted sites per peak: 1.15	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv2_m1	k-mer sig=14.87; evalue=1.3e-15 ttGCTkAsTCAkCawy RWTGMTGASTMAGCAA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 48 (32.00%) Max nb of predicted sites per peak: 4  (ChrIV_A_nidulans_FGSC_A4:624397-624497(.)) Mean nb of predicted sites per peak: 1.90	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv2_m2	k-mer sig=7.88; evalue=1.3e-08 GmTGACTmAGCva TBGCTKAGTCAKC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 51 (34.00%) Max nb of predicted sites per peak: 4  (ChrIV_A_nidulans_FGSC_A4:624397-624497(.)) Mean nb of predicted sites per peak: 1.57	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv2_m3	k-mer sig=5.31; evalue=4.9e-06 TkAGTCAkCAtty RAATGMTGACTMA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 48 (32.00%) Max nb of predicted sites per peak: 2  (ChrV_A_nidulans_FGSC_A4:3231114-3231214(.)) Mean nb of predicted sites per peak: 1.25	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv2_m4	k-mer sig=3.96; evalue=0.00011 yrGrAAAGGAGGgw WCCCTCCTTTYCYR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 16 (10.67%) Max nb of predicted sites per peak: 5  (ChrII_A_nidulans_FGSC_A4:3411624-3411724(.)) Mean nb of predicted sites per peak: 1.44	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv2_m5	k-mer sig=3.12; evalue=0.00076 tkAGTmAGCwa TWGCTKACTMA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 48 (32.00%) Max nb of predicted sites per peak: 2  (ChrV_A_nidulans_FGSC_A4:3331029-3331129(.)) Mean nb of predicted sites per peak: 1.25	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title N9_vg20 -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb

Warning: Not a single pattern was found in file tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab