RSAT - peak-motifs result

Analysis: 8h_Se_N6 (03/04/2025 12:45)

peak-motifs  -v 1 -title 8h_Se_N6 -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: ctgagtcagca (sig=5.96; e-value=1.1e-06) RC: tgctgactcag oligos_6nt_mkv2_m2 assembly: tgctgactaat (sig=5.96; e-value=1.1e-06) RC: attagtcagca oligos_6nt_mkv2_m3 assembly: tgcttactaat (sig=4.01; e-value=9.8e-05) RC: attagtaagca oligos_6nt_mkv2_m4 assembly: gatgactcag (sig=5.92; e-value=1.2e-06) RC: ctgagtcatc oligos_6nt_mkv2_m5 assembly: tgctgactaagca (sig=5.96; e-value=1.1e-06) RC: tgcttagtcagca	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: gatgactaagc (sig=12.22; e-value=6e-13) RC: gcttagtcatc oligos_7nt_mkv2_m2 assembly: tgctgactcagc (sig=11.45; e-value=3.5e-12) RC: gctgagtcagca oligos_7nt_mkv2_m3 assembly: gattagtaagca (sig=7.82; e-value=1.5e-08) RC: tgcttactaatc oligos_7nt_mkv2_m4 assembly: ctatcta (sig=2.07; e-value=0.0085) RC: tagatag oligos_7nt_mkv2_m5 assembly: actaaata (sig=0.85; e-value=0.14) RC: tatttagt	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=5.96; evalue=1.1e-06 tGmTkASTCAKCady RHTGMTGASTMAKCA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 57 (38.00%) Max nb of predicted sites per peak: 4  (ChrIV_A_nidulans_FGSC_A4:624392-624492(.)) Mean nb of predicted sites per peak: 1.81	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv2_m2	k-mer sig=5.96; evalue=1.1e-06 aaTGMTGACTaAkCr YGMTTAGTCAKCATT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 58 (38.67%) Max nb of predicted sites per peak: 3  (ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)) Mean nb of predicted sites per peak: 1.47	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv2_m3	k-mer sig=4.01; evalue=9.8e-05 mwwGCTKACTAAwyr YRWTTAGTMAGCWWK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 57 (38.00%) Max nb of predicted sites per peak: 3  (ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)) Mean nb of predicted sites per peak: 1.60	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv2_m4	k-mer sig=5.92; evalue=1.2e-06 atGmTGACTmAGCr YGCTKAGTCAKCAT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 54 (36.00%) Max nb of predicted sites per peak: 4  (ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)) Mean nb of predicted sites per peak: 1.57	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv2_m5	k-mer sig=5.96; evalue=1.1e-06 amTGmTGASTmAKCrrg CYYGMTKASTCAKCAKT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 56 (37.33%) Max nb of predicted sites per peak: 4  (ChrIV_A_nidulans_FGSC_A4:624392-624492(.)) Mean nb of predicted sites per peak: 1.59	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv2_m1	k-mer sig=12.22; evalue=6e-13 atGmTGACTMAGCra TYGCTKAGTCAKCAT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 55 (36.67%) Max nb of predicted sites per peak: 4  (ChrIV_A_nidulans_FGSC_A4:624392-624492(.)) Mean nb of predicted sites per peak: 1.51	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv2_m2	k-mer sig=11.45; evalue=3.5e-12 rhtGmTGASTmAKCra TYGMTKASTCAKCADY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 58 (38.67%) Max nb of predicted sites per peak: 4  (ChrIV_A_nidulans_FGSC_A4:624392-624492(.)) Mean nb of predicted sites per peak: 1.79	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv2_m3	k-mer sig=7.82; evalue=1.5e-08 tyrwTkAGTAAGCwak MTWGCTTACTMAWYRA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 58 (38.67%) Max nb of predicted sites per peak: 3  (ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)) Mean nb of predicted sites per peak: 1.81	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv2_m4	k-mer sig=2.07; evalue=0.0085 rmCTATCTAwa TWTAGATAGKY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 27 (18.00%) Max nb of predicted sites per peak: 2  (ChrV_A_nidulans_FGSC_A4:925415-925515(.)) Mean nb of predicted sites per peak: 1.19	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv2_m5	k-mer sig=0.85; evalue=0.14 wwwCTAAATAay RTTATTTAGWWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 29 (19.33%) Max nb of predicted sites per peak: 2  (ChrV_A_nidulans_FGSC_A4:127977-128077(.)) Mean nb of predicted sites per peak: 1.52	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title 8h_Se_N6 -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC

Warning: Not a single pattern was found in file tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab