peak-motifs Main

Sequence composition (test sequences)

Nb of peaks: 81
Total seq. size: 29 kb
Min length: 151 bp
Mean length: 355.284 bp
Max length: 1000 bp [ seq: converted purged ]
[ lengths: list distrib graph ]

Nucleotide composition profiles

Transition frequencies
Position profiles

[ 1nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

Dinucleotide composition profiles

Transition frequencies
Position profiles

[ 2nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

Sequence composition (ctrl sequences)

Nb of peaks: 79
Total seq. size: 26 kb
Min length: 151 bp
Mean length: 326.266 bp
Max length: 1000 bp [ seq: converted purged ]
[ lengths: list distrib graph ]

Nucleotide composition profiles

Transition frequencies
Position profiles

[ 1nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

Dinucleotide composition profiles

Transition frequencies
Position profiles

[ 2nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

motif discovery

oligos_6nt_test_vs_ctrl

oligos_6nt_test_vs_ctrl_m1	assembly: ataataat (sig=5.95; e-value=1.1e-06)	RC: attattat
oligos_6nt_test_vs_ctrl_m2	assembly: aaataataaa (sig=5.95; e-value=1.1e-06)	RC: tttattattt
oligos_6nt_test_vs_ctrl_m3	: (sig=; e-value=1)	RC:
oligos_6nt_test_vs_ctrl_m4	: (sig=; e-value=1)	RC:
oligos_6nt_test_vs_ctrl_m5	: (sig=; e-value=1)	RC:

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

oligos_7nt_test_vs_ctrl

oligos_7nt_test_vs_ctrl_m1	assembly: agcaaca (sig=3.41; e-value=0.00039)	RC: tgttgct
oligos_7nt_test_vs_ctrl_m2	assembly: gaatcga (sig=3.41; e-value=0.00039)	RC: tcgattc
oligos_7nt_test_vs_ctrl_m3	assembly: catcgatg (sig=3.41; e-value=0.00039)	RC: catcgatg
oligos_7nt_test_vs_ctrl_m4	assembly: aaataat (sig=2.76; e-value=0.0017)	RC: attattt
oligos_7nt_test_vs_ctrl_m5	assembly: cacctga (sig=1.34; e-value=0.046)	RC: tcaggtg

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

Motif discovery

Motif 1 oligos_6nt_test_vs_ctrl_m1

k-mer sig=5.95; evalue=1.1e-06

waAtAAtAAtrw

WYATTATTATTW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 11 (13.58%)
Max nb of predicted sites per peak: 2
(mito_C_glabrata_CBS138_bPeak_7)
Mean nb of predicted sites per peak: 1.27

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_test_vs_ctrl_m2

k-mer sig=5.95; evalue=1.1e-06

amaAAtAAtAAaaa

TTTTTATTATTTKT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 22 (27.16%)
Max nb of predicted sites per peak: 3
(mito_C_glabrata_CBS138_bPeak_9)
Mean nb of predicted sites per peak: 1.59

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_7nt_test_vs_ctrl_m1

k-mer sig=3.41; evalue=0.00039

rkAGCAaCAsm

KSTGTTGCTMY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9 (11.11%)
Max nb of predicted sites per peak: 2
(ChrD_C_glabrata_CBS138_bPeak_1)
Mean nb of predicted sites per peak: 1.11

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_7nt_test_vs_ctrl_m2

k-mer sig=3.41; evalue=0.00039

gdGAAtCGAtv

BATCGATTCHC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3 (3.70%)
Max nb of predicted sites per peak: 2
(ChrK_C_glabrata_CBS138_bPeak_18)
Mean nb of predicted sites per peak: 1.33

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_7nt_test_vs_ctrl_m3

k-mer sig=3.41; evalue=0.00039

vbCAtCGATGmc

GKCATCGATGVB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 7 (8.64%)
Max nb of predicted sites per peak: 2
(ChrK_C_glabrata_CBS138_bPeak_9)
Mean nb of predicted sites per peak: 2.00

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_7nt_test_vs_ctrl_m4

k-mer sig=2.76; evalue=0.0017

mcAAATAATra

TYATTATTTGK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 22 (27.16%)
Max nb of predicted sites per peak: 4
(mito_C_glabrata_CBS138_bPeak_7)
Mean nb of predicted sites per peak: 1.32

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_7nt_test_vs_ctrl_m5

k-mer sig=1.34; evalue=0.046

mrCACCTGaka

TMTCAGGTGYK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 11 (13.58%)
Max nb of predicted sites per peak: 2
(ChrE_C_glabrata_CBS138_bPeak_6)
Mean nb of predicted sites per peak: 1.09

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: Main (16/05/2025 01:24)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results