peak-motifs MEblack_Up3

Motif discovery

Motif 1 oligos_6nt_test_vs_ctrl_m1

k-mer sig=148.19; evalue=6.5e-149

ssmaAAACCCTaayyy

RRRTTAGGGTTTTKSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssmaAAACCCTaayyy

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.9375 0.933 0.875 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 15 0.9375 0.891 0.836 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 14 0.8235 0.964 0.794 NA NA

Total matches= 33 (30 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 636 (28.70%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.19

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_test_vs_ctrl_m2

k-mer sig=81.69; evalue=2e-82

skaGGCCCAaacv

BGTTTGGGCCTMS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor skaGGCCCAaacv

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 13 0.8667 0.969 0.839 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 13 0.8667 0.925 0.802 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6923 0.976 0.675 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 464 (20.94%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr01g0004301)
Mean nb of predicted sites per peak: 1.32

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_test_vs_ctrl_m3

k-mer sig=76.65; evalue=2.2e-77

mvaaGCCCAaamv

BKTTTGGGCTTBK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mvaaGCCCAaamv

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 13 0.8667 0.882 0.764 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 13 0.8667 0.856 0.742 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6923 0.861 0.596 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 398 (17.96%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr02g0152301)
Mean nb of predicted sites per peak: 1.22

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_test_vs_ctrl_m4

k-mer sig=40.24; evalue=5.8e-41

krrtGGCGGGaaarg

CYTTTCCCGCCAYYM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor krrtGGCGGGaaarg

E2FD:MA1732.1:JASPAR E2FD/MA1732.1/JASPAR D 14 0.8750 0.859 0.751 NA NA

DEL2.ampDAP:M0366:AthalianaCistrome DEL2.ampDAP/M0366/AthalianaCistrome D 14 0.8750 0.859 0.751 NA NA

DEL1.ampDAP:M0365:AthalianaCistrome DEL1.ampDAP/M0365/AthalianaCistrome D 14 0.8750 0.855 0.749 NA NA

Total matches= 18 (15 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 418 (18.86%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr07g0180301)
Mean nb of predicted sites per peak: 1.21

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_test_vs_ctrl_m5

k-mer sig=34.61; evalue=2.5e-35

cyCCaACGGCtacg

CGTAGCCGTTGGRG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cyCCaACGGCtacg

MYB3R3:EEAD0045:EEADannot MYB3R3/EEAD0045/EEADannot R 14 1.0000 0.836 0.836 NA NA

ZIM.DAP:M0290:AthalianaCistrome ZIM.DAP/M0290/AthalianaCistrome R 14 0.9333 0.763 0.712 NA NA

MYB3R1:MA1178.2:JASPAR MYB3R1/MA1178.2/JASPAR D 13 0.9286 0.710 0.660 NA NA

Total matches= 31 (28 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 291 (13.13%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr12g0199901)
Mean nb of predicted sites per peak: 1.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_6nt_test_vs_ctrl_m6

k-mer sig=81.69; evalue=2e-82

kdaaTGGGCCtkr

YMAGGCCCATTHM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kdaaTGGGCCtkr

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR R 13 0.8667 0.964 0.836 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot D 13 0.8667 0.956 0.828 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR R 9 0.6923 0.971 0.672 NA NA

Total matches= 14 (11 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 509 (22.97%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr02g0152301)
Mean nb of predicted sites per peak: 1.37

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_6nt_test_vs_ctrl_m7

k-mer sig=148.19; evalue=6.5e-149

scmaAAACCCTaryy

RRYTAGGGTTTTKGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scmaAAACCCTaryy

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 15 1.0000 0.854 0.854 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 14 0.8750 0.911 0.797 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 13 0.7647 0.939 0.718 NA NA

Total matches= 30 (27 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 623 (28.11%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_6nt_test_vs_ctrl_m8

k-mer sig=148.19; evalue=6.5e-149

grrttaGGGTTTargg

CCYTAAACCCTAAYYC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor grrttaGGGTTTargg

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 15 0.9375 0.946 0.887 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR R 15 0.9375 0.911 0.854 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 14 0.8235 0.971 0.799 NA NA

Total matches= 36 (33 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 793 (35.79%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr24g0399901)
Mean nb of predicted sites per peak: 1.26

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_6nt_test_vs_ctrl_m9

k-mer sig=23.98; evalue=1e-24

mtCCAACGGtCvm

KBGACCGTTGGAK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mtCCAACGGtCvm

MYB3R1:MA1178.2:JASPAR MYB3R1/MA1178.2/JASPAR D 13 1.0000 0.885 0.885 NA NA

ZIM.DAP:M0290:AthalianaCistrome ZIM.DAP/M0290/AthalianaCistrome R 13 0.8667 0.832 0.721 NA NA

MYB73:MA1394.2:JASPAR MYB73/MA1394.2/JASPAR D 11 0.7857 0.853 0.670 NA NA

Total matches= 54 (51 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 224 (10.11%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr21g0309841)
Mean nb of predicted sites per peak: 1.15

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_6nt_test_vs_ctrl_m10

k-mer sig=38.21; evalue=6.2e-39

srrtGGCGGaGrrg

CYYCTCCGCCAYYS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor srrtGGCGGaGrrg

ERF13:MA1254.1:JASPAR ERF13/MA1254.1/JASPAR R 14 0.9333 0.792 0.739 NA NA

ERF13.ampDAP:M0032:AthalianaCistrome ERF13.ampDAP/M0032/AthalianaCistrome D 14 0.9333 0.786 0.734 NA NA

ERF105:MA1000.2:JASPAR ERF105/MA1000.2/JASPAR D 14 0.9333 0.765 0.714 NA NA

Total matches= 188 (185 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 513 (23.15%)
Max nb of predicted sites per peak: 8
(gene-Lalb_Chr07g0189731)
Mean nb of predicted sites per peak: 1.69

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_test_vs_ctrl_m1

k-mer sig=181.01; evalue=9.8e-182

ssmaAAACCCTAatyyc

GRRATTAGGGTTTTKSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssmaAAACCCTAatyyc

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 15 0.8824 0.956 0.844 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.8824 0.925 0.817 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 17 0.8947 0.889 0.796 NA NA

Total matches= 27 (24 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 616 (27.80%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_test_vs_ctrl_m2

k-mer sig=57.78; evalue=1.7e-58

vcaaaGCCCAatcvm

KBGATTGGGCTTTGB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vcaaaGCCCAatcvm

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 15 1.0000 0.854 0.854 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 15 1.0000 0.837 0.837 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6000 0.871 0.522 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 355 (16.02%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr02g0152301)
Mean nb of predicted sites per peak: 1.21

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_test_vs_ctrl_m3

k-mer sig=56.70; evalue=2e-57

gytaGGCCCAatcvs

SBGATTGGGCCTARC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gytaGGCCCAatcvs

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 15 1.0000 0.968 0.968 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 15 1.0000 0.897 0.897 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6000 0.992 0.595 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 366 (16.52%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr10g0102881)
Mean nb of predicted sites per peak: 1.24

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_test_vs_ctrl_m4

k-mer sig=181.01; evalue=9.8e-182

scmaAAACCCTAryyc

GRRYTAGGGTTTTKGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scmaAAACCCTAryyc

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.9375 0.906 0.849 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 15 0.9375 0.859 0.805 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 14 0.8235 0.938 0.772 NA NA

Total matches= 30 (27 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 617 (27.84%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_test_vs_ctrl_m5

k-mer sig=44.73; evalue=1.9e-45

rrartGGCGGGaaark

MYTTTCCCGCCAYTYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrartGGCGGGaaark

E2FD:MA1732.1:JASPAR E2FD/MA1732.1/JASPAR D 15 0.9375 0.835 0.783 NA NA

DEL2.ampDAP:M0366:AthalianaCistrome DEL2.ampDAP/M0366/AthalianaCistrome D 15 0.9375 0.835 0.783 NA NA

DEL1.ampDAP:M0365:AthalianaCistrome DEL1.ampDAP/M0365/AthalianaCistrome D 15 0.9375 0.831 0.779 NA NA

Total matches= 17 (14 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 417 (18.82%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr24g0400071)
Mean nb of predicted sites per peak: 1.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 oligos_7nt_test_vs_ctrl_m6

k-mer sig=181.01; evalue=9.8e-182

grrrtTAGGGTTTargg

CCYTAAACCCTAAYYYC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor grrrtTAGGGTTTargg

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.8824 0.968 0.854 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 15 0.8824 0.945 0.834 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR R 17 0.8947 0.915 0.819 NA NA

Total matches= 30 (27 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 773 (34.88%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.24

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 oligos_7nt_test_vs_ctrl_m7

k-mer sig=56.70; evalue=2e-57

kytaGGCCCAaaasv

BSTTTTGGGCCTARM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kytaGGCCCAaaasv

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 15 1.0000 0.932 0.932 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 15 1.0000 0.884 0.884 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6000 0.950 0.570 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 357 (16.11%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr24g0397981)
Mean nb of predicted sites per peak: 1.23

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 oligos_7nt_test_vs_ctrl_m8

k-mer sig=25.81; evalue=1.5e-26

vctcCaaCGGCtaCgd

HCGTAGCCGTTGGAGB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vctcCaaCGGCtaCgd

MYB3R3:EEAD0045:EEADannot MYB3R3/EEAD0045/EEADannot R 14 0.8750 0.820 0.718 NA NA

ZIM.DAP:M0290:AthalianaCistrome ZIM.DAP/M0290/AthalianaCistrome R 15 0.9375 0.709 0.665 NA NA

MYB3R4:MA1180.2:JASPAR MYB3R4/MA1180.2/JASPAR R 12 0.7500 0.852 0.639 NA NA

Total matches= 18 (15 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 288 (13.00%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr12g0199901)
Mean nb of predicted sites per peak: 1.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 oligos_7nt_test_vs_ctrl_m9

k-mer sig=57.78; evalue=1.7e-58

vyaaaGCCCAttwk

MWAATGGGCTTTRB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vyaaaGCCCAttwk

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 14 0.9333 0.871 0.813 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 14 0.9333 0.798 0.745 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6429 0.826 0.531 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 321 (14.49%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr04g0258261)
Mean nb of predicted sites per peak: 1.21

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 oligos_7nt_test_vs_ctrl_m10

k-mer sig=181.01; evalue=9.8e-182

scgAAACCCTAayybs

SVRRTTAGGGTTTCGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scgAAACCCTAayybs

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 15 0.9375 0.971 0.910 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.9375 0.944 0.885 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 16 0.8421 0.907 0.764 NA NA

Total matches= 37 (34 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 638 (28.79%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.19

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 21 oligos_8nt_test_vs_ctrl_m1

k-mer sig=176.47; evalue=3.4e-177

cscaAAACCCTAatyys

SRRATTAGGGTTTTGSG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cscaAAACCCTAatyys

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 15 0.8824 0.961 0.848 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.8824 0.933 0.823 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 17 0.8947 0.886 0.793 NA NA

Total matches= 30 (27 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 602 (27.17%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 22 oligos_8nt_test_vs_ctrl_m2

k-mer sig=176.47; evalue=3.4e-177

sccaAAACCCTArcys

SRGYTAGGGTTTTGGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sccaAAACCCTArcys

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.9375 0.908 0.851 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 15 0.9375 0.840 0.787 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 14 0.8235 0.935 0.770 NA NA

Total matches= 31 (28 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 616 (27.80%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 23 oligos_8nt_test_vs_ctrl_m3

k-mer sig=176.47; evalue=3.4e-177

grrrtTaGGGTTTarggk

MCCYTAAACCCTAAYYYC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor grrrtTaGGGTTTarggk

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR R 18 0.9474 0.915 0.867 NA NA

TBP3.ampDAP:M0621:AthalianaCistrome TBP3.ampDAP/M0621/AthalianaCistrome D 17 0.8500 0.947 0.805 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.8333 0.964 0.803 NA NA

Total matches= 27 (24 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 755 (34.07%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.25

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 24 oligos_8nt_test_vs_ctrl_m4

k-mer sig=35.28; evalue=5.2e-36

rraaaAGCCCAatarr

YYTATTGGGCTTTTYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rraaaAGCCCAatarr

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 15 0.9375 0.844 0.792 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 15 0.9375 0.825 0.774 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.5625 0.868 0.488 NA NA

Total matches= 11 (8 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 309 (13.94%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr20g0112921)
Mean nb of predicted sites per peak: 1.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 25 oligos_8nt_test_vs_ctrl_m5

k-mer sig=30.66; evalue=2.2e-31

kttaGGCCCAaaasv

BSTTTTGGGCCTAAM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kttaGGCCCAaaasv

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 15 1.0000 0.923 0.923 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 15 1.0000 0.870 0.870 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6000 0.946 0.568 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 330 (14.89%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr24g0397981)
Mean nb of predicted sites per peak: 1.22

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 26 oligos_8nt_test_vs_ctrl_m6

k-mer sig=30.64; evalue=2.3e-31

rrttttGGCGGGaaaadr

YHTTTTCCCGCCAAAAYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrttttGGCGGGaaaadr

E2FD:MA1732.1:JASPAR E2FD/MA1732.1/JASPAR D 15 0.8333 0.979 0.816 NA NA

DEL2.ampDAP:M0366:AthalianaCistrome DEL2.ampDAP/M0366/AthalianaCistrome D 15 0.8333 0.979 0.816 NA NA

DEL1.ampDAP:M0365:AthalianaCistrome DEL1.ampDAP/M0365/AthalianaCistrome D 15 0.8333 0.977 0.814 NA NA

Total matches= 14 (11 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 353 (15.93%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr24g0399901)
Mean nb of predicted sites per peak: 1.15

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 27 oligos_8nt_test_vs_ctrl_m7

k-mer sig=176.47; evalue=3.4e-177

grrrtTAGGGTTTcrgg

CCYGAAACCCTAAYYYC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor grrrtTAGGGTTTcrgg

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.8824 0.964 0.850 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 15 0.8824 0.936 0.826 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR R 17 0.8947 0.907 0.811 NA NA

Total matches= 28 (25 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 739 (33.35%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.25

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 28 oligos_8nt_test_vs_ctrl_m8

k-mer sig=27.08; evalue=8.3e-28

sbGtaaCGGCtaCgk

MCGTAGCCGTTACVS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sbGtaaCGGCtaCgk

MYB3R3:EEAD0045:EEADannot MYB3R3/EEAD0045/EEADannot R 14 0.9333 0.959 0.895 NA NA

AT3G10030.ampDAP:M0779:AthalianaCistrome AT3G10030.ampDAP/M0779/AthalianaCistrome D 15 1.0000 0.713 0.713 NA NA

MYB118:MA1170.1:JASPAR MYB118/MA1170.1/JASPAR R 15 0.8824 0.806 0.711 NA NA

Total matches= 54 (51 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 301 (13.58%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr12g0199901)
Mean nb of predicted sites per peak: 1.21

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 29 oligos_8nt_test_vs_ctrl_m9

k-mer sig=176.47; evalue=3.4e-177

grrrtTaGGGTTTtrggk

MCCYAAAACCCTAAYYYC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor grrrtTaGGGTTTtrggk

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR R 18 0.9474 0.888 0.841 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.8333 0.951 0.793 NA NA

TBP3.ampDAP:M0621:AthalianaCistrome TBP3.ampDAP/M0621/AthalianaCistrome D 17 0.8500 0.921 0.783 NA NA

Total matches= 25 (22 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 739 (33.35%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.24

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 30 oligos_8nt_test_vs_ctrl_m10

k-mer sig=176.47; evalue=3.4e-177

ssmaAAACCCTAatyyc

GRRATTAGGGTTTTKSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssmaAAACCCTAatyyc

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 15 0.8824 0.954 0.842 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.8824 0.922 0.814 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 17 0.8947 0.890 0.796 NA NA

Total matches= 26 (23 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 609 (27.48%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 31 dyads_test_vs_ctrl_m1

k-mer sig=148.99; evalue=1e-149

csmaAAACCCTAatyy

RRATTAGGGTTTTKSG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor csmaAAACCCTAatyy

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.9375 0.919 0.862 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 15 0.9375 0.881 0.826 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 14 0.8235 0.953 0.785 NA NA

Total matches= 32 (29 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 624 (28.16%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 32 dyads_test_vs_ctrl_m2

k-mer sig=83.44; evalue=3.6e-84

thaGGCCCAaatsr

YSATTTGGGCCTDA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor thaGGCCCAaatsr

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 14 0.9333 0.941 0.879 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 14 0.9333 0.899 0.839 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6429 0.959 0.616 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 393 (17.73%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr19g0138401)
Mean nb of predicted sites per peak: 1.24

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 33 dyads_test_vs_ctrl_m3

k-mer sig=100.07; evalue=8.5e-101

ssaaAAGCCCAaatsr

YSATTTGGGCTTTTSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssaaAAGCCCAaatsr

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 15 0.9375 0.805 0.755 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 15 0.9375 0.764 0.716 NA NA

TRB2:MA1355.2:JASPAR TRB2/MA1355.2/JASPAR D 11 0.6875 0.727 0.500 NA NA

Total matches= 13 (10 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 316 (14.26%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr20g0112921)
Mean nb of predicted sites per peak: 1.15

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 34 dyads_test_vs_ctrl_m4

k-mer sig=43.38; evalue=4.2e-44

rgttttGGCGGGAaaakr

YMTTTTCCCGCCAAAACY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rgttttGGCGGGAaaakr

E2FD:MA1732.1:JASPAR E2FD/MA1732.1/JASPAR D 15 0.8333 0.988 0.823 NA NA

DEL2.ampDAP:M0366:AthalianaCistrome DEL2.ampDAP/M0366/AthalianaCistrome D 15 0.8333 0.988 0.823 NA NA

DEL1.ampDAP:M0365:AthalianaCistrome DEL1.ampDAP/M0365/AthalianaCistrome D 15 0.8333 0.987 0.822 NA NA

Total matches= 15 (12 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 329 (14.85%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr19g0138871)
Mean nb of predicted sites per peak: 1.12

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 35 dyads_test_vs_ctrl_m5

k-mer sig=148.99; evalue=1e-149

ktGGGGyTTagg

CCTAARCCCCAM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ktGGGGyTTagg

TRP5:MA1802.1:JASPAR TRP5/MA1802.1/JASPAR R 10 0.8333 0.928 0.773 NA NA

XM_002876896.1:M1282_1.02:CISBP XM_002876896.1/M1282_1.02/CISBP R 12 0.9231 0.766 0.707 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 12 0.8000 0.797 0.638 NA NA

Total matches= 23 (20 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 522 (23.56%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.21

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 36 dyads_test_vs_ctrl_m6

k-mer sig=36.20; evalue=6.3e-37

ysCaaCGGCtayr

YRTAGCCGTTGSR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ysCaaCGGCtayr

MYB3R3:EEAD0045:EEADannot MYB3R3/EEAD0045/EEADannot R 13 0.9286 0.860 0.799 NA NA

MYB3R4:MA1180.2:JASPAR MYB3R4/MA1180.2/JASPAR R 11 0.7857 0.897 0.705 NA NA

MYB44:MA2027.1:JASPAR MYB44/MA2027.1/JASPAR D 12 0.9231 0.762 0.703 NA NA

Total matches= 36 (33 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 303 (13.67%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr12g0199901)
Mean nb of predicted sites per peak: 1.19

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 37 dyads_test_vs_ctrl_m7

k-mer sig=83.44; evalue=3.6e-84

kdwTGGGCCtrr

YYAGGCCCAWHM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kdwTGGGCCtrr

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR R 12 0.8000 0.959 0.767 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot D 12 0.8000 0.958 0.767 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR R 9 0.7500 0.965 0.724 NA NA

Total matches= 25 (22 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 524 (23.65%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr24g0397981)
Mean nb of predicted sites per peak: 1.36

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 38 dyads_test_vs_ctrl_m8

k-mer sig=148.99; evalue=1e-149

scaaAAACCCTaryy

RRYTAGGGTTTTTGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scaaAAACCCTaryy

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 15 1.0000 0.851 0.851 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 14 0.8750 0.908 0.794 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 13 0.7647 0.936 0.716 NA NA

Total matches= 30 (27 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 614 (27.71%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 39 dyads_test_vs_ctrl_m9

k-mer sig=39.67; evalue=2.1e-40

ggtkktGGCGGaGrv

BYCTCCGCCAMMACC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ggtkktGGCGGaGrv

AT1G22810:MA1255.1:JASPAR AT1G22810/MA1255.1/JASPAR D 15 1.0000 0.729 0.729 NA NA

DEL1.ampDAP:M0365:AthalianaCistrome DEL1.ampDAP/M0365/AthalianaCistrome D 14 0.8750 0.761 0.666 NA NA

E2FD:MA1732.1:JASPAR E2FD/MA1732.1/JASPAR D 14 0.8750 0.759 0.664 NA NA

Total matches= 189 (186 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 464 (20.94%)
Max nb of predicted sites per peak: 8
(gene-Lalb_Chr19g0132451)
Mean nb of predicted sites per peak: 1.69

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 40 dyads_test_vs_ctrl_m10

k-mer sig=24.81; evalue=1.5e-25

hbCAACGGTkr

YMACCGTTGVD

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor hbCAACGGTkr

PC-MYB1:MA2352.1:JASPAR PC-MYB1/MA2352.1/JASPAR R 9 0.8182 0.910 0.745 NA NA

MYB3R1:MA1178.2:JASPAR MYB3R1/MA1178.2/JASPAR D 11 0.8462 0.870 0.736 NA NA

MYB70:MA1393.2:JASPAR MYB70/MA1393.2/JASPAR R 10 0.8333 0.870 0.725 NA NA

Total matches= 88 (85 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 182 (8.21%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr16g0389731)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus footprintDB-plants database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: MEblack_Up3_W3 (26/05/2025 08:36)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results