peak-motifs znf492

motif discovery

oligos_6nt_mkv3

oligos_6nt_mkv3_m1	assembly: aaaaggca (sig=8.11; e-value=7.8e-09)	RC: tgcctttt
oligos_6nt_mkv3_m2	assembly: aagcaacaaaa (sig=3.15; e-value=0.00071)	RC: ttttgttgctt
oligos_6nt_mkv3_m3	assembly: caagaaa (sig=1.24; e-value=0.058)	RC: tttcttg
oligos_6nt_mkv3_m4	assembly: agagcaacaaaa (sig=3.15; e-value=0.00071)	RC: ttttgttgctct
oligos_6nt_mkv3_m5	assembly: ctcagcc (sig=0.43; e-value=0.37)	RC: ggctgag

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

positions_6nt

positions_6nt_m1	assembly: aaaaagg (sig=5.85; e-value=1.4e-06)	RC: ccttttt
positions_6nt_m2	assembly: caacaaa (sig=1.23; e-value=0.059)	RC: tttgttg
positions_6nt_m3	: (sig=; e-value=1)	RC:
positions_6nt_m4	: (sig=; e-value=1)	RC:
positions_6nt_m5	: (sig=; e-value=1)	RC:

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

oligos_7nt_mkv4

oligos_7nt_mkv4_m1	assembly: aaaaaggca (sig=5.15; e-value=7.1e-06)	RC: tgccttttt
oligos_7nt_mkv4_m2	assembly: agcaacaaaa (sig=2.63; e-value=0.0023)	RC: ttttgttgct
oligos_7nt_mkv4_m3	assembly: actaaaa (sig=2.38; e-value=0.0042)	RC: ttttagt
oligos_7nt_mkv4_m4	assembly: tagataa (sig=0.02; e-value=0.95)	RC: ttatcta
oligos_7nt_mkv4_m5	: (sig=; e-value=1)	RC:

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

positions_7nt

positions_7nt_m1	assembly: aaaaagg (sig=3.59; e-value=0.00026)	RC: ccttttt
positions_7nt_m2	assembly: aacaaaa (sig=1.53; e-value=0.03)	RC: ttttgtt
positions_7nt_m3	: (sig=; e-value=1)	RC:
positions_7nt_m4	: (sig=; e-value=1)	RC:
positions_7nt_m5	: (sig=; e-value=1)	RC:

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

Motif discovery

Motif 1 oligos_6nt_mkv3_m1

k-mer sig=8.11; evalue=7.8e-09

yaAAAAGGCadr

YHTGCCTTTTTR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 71 (10.07%)
Max nb of predicted sites per peak: 38
(chr11:129921914-129922204)
Mean nb of predicted sites per peak: 4.28

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv3_m2

k-mer sig=3.15; evalue=0.00071

aarAGCAACAAAAaG

CTTTTTGTTGCTYTT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 106 (15.04%)
Max nb of predicted sites per peak: 76
(chr11:129921914-129922204)
Mean nb of predicted sites per peak: 5.44

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv3_m3

k-mer sig=1.24; evalue=0.058

rrmAAGAAArr

YYTTTCTTKYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 41 (5.82%)
Max nb of predicted sites per peak: 48
(chr2:203785352-203785604)
Mean nb of predicted sites per peak: 5.90

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv3_m4

k-mer sig=3.15; evalue=0.00071

aaaGAGCAACAAAAaG

CTTTTTGTTGCTCTTT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 106 (15.04%)
Max nb of predicted sites per peak: 38
(chr11:129921914-129922204)
Mean nb of predicted sites per peak: 4.82

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv3_m5

k-mer sig=0.43; evalue=0.37

sbCTCAGCCtc

GAGGCTGAGVS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 23 (3.26%)
Max nb of predicted sites per peak: 36
(chr14:51473859-51474029)
Mean nb of predicted sites per peak: 6.43

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 positions_6nt_m1

k-mer sig=5.85; evalue=1.4e-06

acAAAAAGGma

TKCCTTTTTGT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 94 (13.33%)
Max nb of predicted sites per peak: 38
(chr11:129921914-129922204)
Mean nb of predicted sites per peak: 4.21

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 positions_6nt_m2

k-mer sig=1.23; evalue=0.059

asCAACAAAaa

TTTTTGTTGST

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 57 (8.09%)
Max nb of predicted sites per peak: 38
(chr11:129921914-129922204)
Mean nb of predicted sites per peak: 4.02

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_7nt_mkv4_m1

k-mer sig=5.15; evalue=7.1e-06

asAAAAAGGCArv

BYTGCCTTTTTST

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 86 (12.20%)
Max nb of predicted sites per peak: 38
(chr11:129921914-129922204)
Mean nb of predicted sites per peak: 4.37

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_7nt_mkv4_m2

k-mer sig=2.63; evalue=0.0023

aRAGCAACAAAAaG

CTTTTTGTTGCTYT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 105 (14.89%)
Max nb of predicted sites per peak: 76
(chr11:129921914-129922204)
Mean nb of predicted sites per peak: 5.39

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_7nt_mkv4_m3

k-mer sig=2.38; evalue=0.0042

raACTAaAAyr

YRTTTTAGTTY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 32 (4.54%)
Max nb of predicted sites per peak: 25
(chr18:46764892-46765009)
Mean nb of predicted sites per peak: 3.22

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_mkv4_m4

k-mer sig=0.02; evalue=0.95

mwTAGATAAtt

AATTATCTAWK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 23 (3.26%)
Max nb of predicted sites per peak: 76
(chr11:129921914-129922204)
Mean nb of predicted sites per peak: 9.30

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 positions_7nt_m1

k-mer sig=3.59; evalue=0.00026

acAAAAAGGma

TKCCTTTTTGT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 94 (13.33%)
Max nb of predicted sites per peak: 38
(chr11:129921914-129922204)
Mean nb of predicted sites per peak: 4.21

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 positions_7nt_m2

k-mer sig=1.53; evalue=0.03

rcAACAAAAmr

YKTTTTGTTGY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 66 (9.36%)
Max nb of predicted sites per peak: 38
(chr11:129921914-129922204)
Mean nb of predicted sites per peak: 4.30

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: znf492_2 (26/05/2025 21:13)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results