RSAT - peak-motifs result

Analysis: Set_3_TOP150 (17/08/2025 12:15)

peak-motifs  -v 1 -title Set_3_TOP150 -i $RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121447_2025-08-17.121447_Kvls6d/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121447_2025-08-17.121447_Kvls6d

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: gcacgtgc (sig=7.51; e-value=3.1e-08) RC: gcacgtgc oligos_6nt_mkv2_m2 assembly: cctgtcag (sig=5.78; e-value=1.7e-06) RC: ctgacagg oligos_6nt_mkv2_m3 assembly: gcacgtgg (sig=7.51; e-value=3.1e-08) RC: ccacgtgc oligos_6nt_mkv2_m4 assembly: cctgtcaa (sig=5.78; e-value=1.7e-06) RC: ttgacagg oligos_6nt_mkv2_m5 assembly: tgagtcag (sig=1.97; e-value=0.011) RC: ctgactca	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: ggcacgtgcc (sig=6.10; e-value=7.9e-07) RC: ggcacgtgcc oligos_7nt_mkv2_m2 assembly: gagtaagca (sig=5.18; e-value=6.6e-06) RC: tgcttactc oligos_7nt_mkv2_m3 assembly: gctgactcagc (sig=4.59; e-value=2.6e-05) RC: gctgagtcagc oligos_7nt_mkv2_m4 assembly: cctgtcaga (sig=3.18; e-value=0.00066) RC: tctgacagg oligos_7nt_mkv2_m5 assembly: ggcacgtggg (sig=6.10; e-value=7.9e-07) RC: cccacgtgcc	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=7.51; evalue=3.1e-08 mkgCACGTGcmk MKGCACGTGCMK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 16 (10.67%) Max nb of predicted sites per peak: 2  (ChrV_A_nidulans_FGSC_A4:2446760-2446860(.)) Mean nb of predicted sites per peak: 1.94	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv2_m2	k-mer sig=5.78; evalue=1.7e-06 srvCTGTCAgwt AWCTGACAGBYS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 16 (10.67%) Max nb of predicted sites per peak: 3  (ChrVIII_A_nidulans_FGSC_A4:2472504-2472604(.)) Mean nb of predicted sites per peak: 1.38	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv2_m3	k-mer sig=7.51; evalue=3.1e-08 crGCACGTGGyr YRCCACGTGCYG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 18 (12.00%) Max nb of predicted sites per peak: 2  (ChrVI_A_nidulans_FGSC_A4:2133789-2133889(.)) Mean nb of predicted sites per peak: 1.06	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv2_m4	k-mer sig=5.78; evalue=1.7e-06 mrsCTGTCAawt AWTTGACAGSYK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 18 (12.00%) Max nb of predicted sites per peak: 2  (ChrV_A_nidulans_FGSC_A4:2041886-2041986(.)) Mean nb of predicted sites per peak: 1.28	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv2_m5	k-mer sig=1.97; evalue=0.011 gmTGAGTCAGcw WGCTGACTCAKC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 21 (14.00%) Max nb of predicted sites per peak: 4  (ChrIV_A_nidulans_FGSC_A4:624397-624497(.)) Mean nb of predicted sites per peak: 1.67	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv2_m1	k-mer sig=6.10; evalue=7.9e-07 wmkgCACGTGcmkh DMKGCACGTGCMKW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 15 (10.00%) Max nb of predicted sites per peak: 2  (ChrV_A_nidulans_FGSC_A4:2446760-2446860(.)) Mean nb of predicted sites per peak: 1.87	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv2_m2	k-mer sig=5.18; evalue=6.6e-06 mTGAGTMAGCaar YTTGCTKACTCAK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 25 (16.67%) Max nb of predicted sites per peak: 3  (ChrIV_A_nidulans_FGSC_A4:624397-624497(.)) Mean nb of predicted sites per peak: 1.28	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv2_m3	k-mer sig=4.59; evalue=2.6e-05 ytGCTGAsTCAGCar YTGCTGASTCAGCAR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 23 (15.33%) Max nb of predicted sites per peak: 4  (ChrIV_A_nidulans_FGSC_A4:624397-624497(.)) Mean nb of predicted sites per peak: 2.04	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv2_m4	k-mer sig=3.18; evalue=0.00066 swCCTGTCAgacc GGTCTGACAGGWS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 15 (10.00%) Max nb of predicted sites per peak: 1  (ChrV_A_nidulans_FGSC_A4:2446760-2446860(.)) Mean nb of predicted sites per peak: 1.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv2_m5	k-mer sig=6.10; evalue=7.9e-07 rsgGCACGTGGkvy RBMCCACGTGCCSY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 22 (14.67%) Max nb of predicted sites per peak: 3  (ChrV_A_nidulans_FGSC_A4:3075536-3075636(.)) Mean nb of predicted sites per peak: 1.27	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title Set_3_TOP150 -i $RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121447_2025-08-17.121447_Kvls6d/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121447_2025-08-17.121447_Kvls6d

Warning: Not a single pattern was found in file tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121447_2025-08-17.121447_Kvls6d/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121447_2025-08-17.121447_Kvls6d/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab