RSAT - peak-motifs result

Analysis: Set_4_TOP150 (17/08/2025 12:15)

peak-motifs  -v 1 -title Set_4_TOP150 -i $RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121501_2025-08-17.121501_7wfl8K/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121501_2025-08-17.121501_7wfl8K

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: gcacgtgc (sig=5.44; e-value=3.6e-06) RC: gcacgtgc oligos_6nt_mkv2_m2 assembly: tgagtcagc (sig=3.06; e-value=0.00087) RC: gctgactca oligos_6nt_mkv2_m3 assembly: cacgagg (sig=2.06; e-value=0.0087) RC: cctcgtg oligos_6nt_mkv2_m4 assembly: ctgtca (sig=1.77; e-value=0.017) RC: tgacag oligos_6nt_mkv2_m5 assembly: gcttac (sig=1.30; e-value=0.05) RC: gtaagc	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: gctgagtcagca (sig=6.31; e-value=4.9e-07) RC: tgctgactcagc oligos_7nt_mkv2_m2 assembly: gcacgtgc (sig=4.30; e-value=5e-05) RC: gcacgtgc oligos_7nt_mkv2_m3 assembly: ccacgagg (sig=1.87; e-value=0.013) RC: cctcgtgg oligos_7nt_mkv2_m4 assembly: agtaagc (sig=1.27; e-value=0.054) RC: gcttact oligos_7nt_mkv2_m5 assembly: tctgaca (sig=0.35; e-value=0.45) RC: tgtcaga	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=5.44; evalue=3.6e-06 ysgCACGTGcsr YSGCACGTGCSR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 14 (9.33%) Max nb of predicted sites per peak: 4  (ChrVII_A_nidulans_FGSC_A4:106959-107059(.)) Mean nb of predicted sites per peak: 2.14	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv2_m2	k-mer sig=3.06; evalue=0.00087 gcTgAGTCAGCav BTGCTGACTCAGC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 29 (19.33%) Max nb of predicted sites per peak: 4  (ChrIV_A_nidulans_FGSC_A4:624407-624507(.)) Mean nb of predicted sites per peak: 1.55	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv2_m3	k-mer sig=2.06; evalue=0.0087 rsCACGAGGrc GYCCTCGTGSY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 12 (8.00%) Max nb of predicted sites per peak: 1  (ChrV_A_nidulans_FGSC_A4:2748943-2749043(.)) Mean nb of predicted sites per peak: 1.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv2_m4	k-mer sig=1.77; evalue=0.017 mvCTGTCArw WYTGACAGBK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 24 (16.00%) Max nb of predicted sites per peak: 2  (ChrV_A_nidulans_FGSC_A4:2041930-2042030(.)) Mean nb of predicted sites per peak: 1.17	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv2_m5	k-mer sig=1.30; evalue=0.05 thGCTTACtv BAGTAAGCDA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 20 (13.33%) Max nb of predicted sites per peak: 1  (ChrV_A_nidulans_FGSC_A4:663496-663596(.)) Mean nb of predicted sites per peak: 1.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv2_m1	k-mer sig=6.31; evalue=4.9e-07 ytGcTGAsTCAGCasy RSTGCTGASTCAGCAR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 22 (14.67%) Max nb of predicted sites per peak: 4  (ChrIV_A_nidulans_FGSC_A4:624407-624507(.)) Mean nb of predicted sites per peak: 1.86	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv2_m2	k-mer sig=4.30; evalue=5e-05 csgCACGTGCsg CSGCACGTGCSG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 15 (10.00%) Max nb of predicted sites per peak: 4  (ChrVII_A_nidulans_FGSC_A4:106959-107059(.)) Mean nb of predicted sites per peak: 2.07	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv2_m3	k-mer sig=1.87; evalue=0.013 swCCACGAGGay RTCCTCGTGGWS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 17 (11.33%) Max nb of predicted sites per peak: 3  (ChrVII_A_nidulans_FGSC_A4:2326877-2326977(.)) Mean nb of predicted sites per peak: 1.29	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv2_m4	k-mer sig=1.27; evalue=0.054 tkAGTAAGCda THGCTTACTMA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 19 (12.67%) Max nb of predicted sites per peak: 2  (ChrVIII_A_nidulans_FGSC_A4:4419412-4419512(.)) Mean nb of predicted sites per peak: 1.16	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv2_m5	k-mer sig=0.35; evalue=0.45 drTCTGACAss SSTGTCAGAYH	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 14 (9.33%) Max nb of predicted sites per peak: 2  (ChrIV_A_nidulans_FGSC_A4:1774467-1774567(.)) Mean nb of predicted sites per peak: 1.07	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title Set_4_TOP150 -i $RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121501_2025-08-17.121501_7wfl8K/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121501_2025-08-17.121501_7wfl8K

Warning: Not a single pattern was found in file tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121501_2025-08-17.121501_7wfl8K/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121501_2025-08-17.121501_7wfl8K/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab