RSAT - peak-motifs result

Analysis: MAPK1_1_peak_motifs (19/12/2025 11:54)

peak-motifs  -v 1 -title MAPK1_1_peak_motifs -i $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.115413_2025-12-19.115413_FZ7H1y/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions,local_words -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.115413_2025-12-19.115413_FZ7H1y

motif discovery
oligos_6nt_mkv1	oligos_6nt_mkv1_m1 assembly: cattccattc (sig=9.17; e-value=6.8e-10) RC: gaatggaatg oligos_6nt_mkv1_m2 assembly: ttcaactc (sig=2.31; e-value=0.0049) RC: gagttgaa oligos_6nt_mkv1_m3 assembly: aaatatc (sig=1.17; e-value=0.068) RC: gatattt oligos_6nt_mkv1_m4 assembly: tgaggcctca (sig=0.99; e-value=0.1) RC: tgaggcctca oligos_6nt_mkv1_m5 assembly: acataaa (sig=0.63; e-value=0.23) RC: tttatgt	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
local_words_6nt	Not a single significant pattern	[local_words_6nt]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv1	oligos_7nt_mkv1_m1 assembly: ggaatggaatg (sig=13.90; e-value=1.3e-14) RC: cattccattcc oligos_7nt_mkv1_m2 assembly: tgagttgaac (sig=5.88; e-value=1.3e-06) RC: gttcaactca oligos_7nt_mkv1_m3 assembly: aaatatc (sig=4.43; e-value=3.7e-05) RC: gatattt oligos_7nt_mkv1_m4 assembly: gtttgaggcctcaaac (sig=2.85; e-value=0.0014) RC: gtttgaggcctcaaac oligos_7nt_mkv1_m5 assembly: caaagtac (sig=1.51; e-value=0.031) RC: gtactttg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
local_words_7nt	Not a single significant pattern	[local_words_7nt]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv1_m1	k-mer sig=9.17; evalue=6.8e-10 TCCaTTCCATTCCa TGGAATGGAATGGA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1 (11.11%) Max nb of predicted sites per peak: 51  (chromosome_GRCh38_20_1_64444167_1:31060434-31060798()) Mean nb of predicted sites per peak: 51.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv1_m2	k-mer sig=2.31; evalue=0.0049 srTTCaACTChs SDGAGTTGAAYS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4 (44.44%) Max nb of predicted sites per peak: 22  (chromosome_GRCh38_20_1_64444167_1:31060434-31060798()) Mean nb of predicted sites per peak: 7.50	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv1_m3	k-mer sig=1.17; evalue=0.068 TaAaATATCaa TTGATATTTTA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4 (44.44%) Max nb of predicted sites per peak: 13  (chromosome_GRCh38_4_1_190214555_1:49711269-49711872()) Mean nb of predicted sites per peak: 9.75	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv1_m4	k-mer sig=0.99; evalue=0.1 yytkAGGCCTmarr YYTKAGGCCTMARR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 2 (22.22%) Max nb of predicted sites per peak: 4  (chromosome_GRCh38_21_1_46709983_1:10806435-10806686()) Mean nb of predicted sites per peak: 4.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv1_m5	k-mer sig=0.63; evalue=0.23 GTACATAAaaT ATTTTATGTAC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4 (44.44%) Max nb of predicted sites per peak: 14  (chromosome_GRCh38_4_1_190214555_1:49711269-49711872()) Mean nb of predicted sites per peak: 9.75	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv1_m1	k-mer sig=13.90; evalue=1.3e-14 aTGGAaTGGAATGGA TCCATTCCATTCCAT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1 (11.11%) Max nb of predicted sites per peak: 45  (chromosome_GRCh38_20_1_64444167_1:31060434-31060798()) Mean nb of predicted sites per peak: 45.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv1_m2	k-mer sig=5.88; evalue=1.3e-06 aswGAGTTGAaysy RSRTTCAACTCWST	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4 (44.44%) Max nb of predicted sites per peak: 6  (chromosome_GRCh38_20_1_64444167_1:28518065-28518421()) Mean nb of predicted sites per peak: 2.50	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv1_m3	k-mer sig=4.43; evalue=3.7e-05 TaAaATATCaa TTGATATTTTA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4 (44.44%) Max nb of predicted sites per peak: 13  (chromosome_GRCh38_4_1_190214555_1:49711269-49711872()) Mean nb of predicted sites per peak: 9.75	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv1_m4	k-mer sig=2.85; evalue=0.0014 ysryywkAGGCCTmwrrysr YSRYYWKAGGCCTMWRRYSR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 2 (22.22%) Max nb of predicted sites per peak: 4  (chromosome_GRCh38_21_1_46709983_1:10806435-10806686()) Mean nb of predicted sites per peak: 3.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv1_m5	k-mer sig=1.51; evalue=0.031 myCAAAGTAYSY RSRTACTTTGRK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4 (44.44%) Max nb of predicted sites per peak: 20  (chromosome_GRCh38_4_1_190214555_1:49711269-49711872()) Mean nb of predicted sites per peak: 15.25	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title MAPK1_1_peak_motifs -i $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.115413_2025-12-19.115413_FZ7H1y/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions,local_words -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/12/19/peak-motifs.2025-12-19.115413_2025-12-19.115413_FZ7H1y

Warning: Not a single pattern was found in file tmp/www-data/2025/12/19/peak-motifs.2025-12-19.115413_2025-12-19.115413_FZ7H1y/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/12/19/peak-motifs.2025-12-19.115413_2025-12-19.115413_FZ7H1y/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/12/19/peak-motifs.2025-12-19.115413_2025-12-19.115413_FZ7H1y/results/local_words_6nt/peak-motifs_local_words-2str-noov_6nt_windgroup50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/12/19/peak-motifs.2025-12-19.115413_2025-12-19.115413_FZ7H1y/results/local_words_7nt/peak-motifs_local_words-2str-noov_7nt_windgroup50.tab