peak-motifs SOX2

Motif discovery

Motif 1 oligos_6nt_mkv4_m1

k-mer sig=37.97; evalue=1.1e-38

wwTAATkAww

WWTMATTAWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2107 (22.00%)
Max nb of predicted sites per peak: 10
(chrX:156669492-156669958)
Mean nb of predicted sites per peak: 1.99

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv4_m2

k-mer sig=35.54; evalue=2.9e-36

daACAATGgad

HTCCATTGTTH

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1343 (14.02%)
Max nb of predicted sites per peak: 12
(chr1:35115675-35116123)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv4_m3

k-mer sig=33.02; evalue=9.5e-34

arCCAATCas

STGATTGGYT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 913 (9.53%)
Max nb of predicted sites per peak: 6
(chr6:70844165-70844611)
Mean nb of predicted sites per peak: 1.24

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv4_m4

k-mer sig=22.63; evalue=2.3e-23

yyCCCCTCCCyc

GRGGGAGGGGRR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1356 (14.16%)
Max nb of predicted sites per peak: 5
(chr4:156236816-156237070)
Mean nb of predicted sites per peak: 1.25

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv4_m5

k-mer sig=21.14; evalue=7.2e-22

waCAAAAGAaa

TTTCTTTTGTW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 885 (9.24%)
Max nb of predicted sites per peak: 3
(chr3:86559658-86560792)
Mean nb of predicted sites per peak: 1.08

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 positions_6nt_m1

k-mer sig=21.05; evalue=8.9e-22

wwwTaTTTTTTAAAAAAtAwww

WWWTATTTTTTAAAAAATAWWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1013 (10.58%)
Max nb of predicted sites per peak: 48
(chr3:136748674-136749736)
Mean nb of predicted sites per peak: 4.56

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 positions_6nt_m2

k-mer sig=9.45; evalue=3.5e-10

rdgAACAATGgaw

WTCCATTGTTCHY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1481 (15.46%)
Max nb of predicted sites per peak: 11
(chr1:35115675-35116123)
Mean nb of predicted sites per peak: 1.14

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 positions_6nt_m3

k-mer sig=6.48; evalue=3.3e-07

raACAAAGra

TYCTTTGTTY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2615 (27.30%)
Max nb of predicted sites per peak: 8
(chr6:12460076-12460358)
Mean nb of predicted sites per peak: 1.28

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 positions_6nt_m4

k-mer sig=21.05; evalue=8.9e-22

wwaTaTTTTAAAAAATAwww

WWWTATTTTTTAAAATATWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1547 (16.15%)
Max nb of predicted sites per peak: 37
(chr3:136748674-136749736)
Mean nb of predicted sites per peak: 3.05

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 positions_6nt_m5

k-mer sig=21.05; evalue=8.9e-22

wwwTaTTTTTTAAAAAArwww

WWWYTTTTTTAAAAAATAWWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1186 (12.38%)
Max nb of predicted sites per peak: 46
(chr3:136748674-136749736)
Mean nb of predicted sites per peak: 3.36

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_mkv5_m1

k-mer sig=14.57; evalue=2.7e-15

ssCCCCGCCCcs

SGGGGCGGGGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1658 (17.31%)
Max nb of predicted sites per peak: 7
(chr19:30029938-30030845)
Mean nb of predicted sites per peak: 1.42

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_mkv5_m2

k-mer sig=14.33; evalue=4.7e-15

ycACTTCCGsb

VSCGGAAGTGR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 484 (5.05%)
Max nb of predicted sites per peak: 5
(chr4:143412755-143412970)
Mean nb of predicted sites per peak: 1.15

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_mkv5_m3

k-mer sig=13.91; evalue=1.2e-14

ssCGCCCCCGss

SSCGGGGGCGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1673 (17.47%)
Max nb of predicted sites per peak: 10
(chr17:80061567-80062157)
Mean nb of predicted sites per peak: 1.56

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_mkv5_m4

k-mer sig=13.71; evalue=1.9e-14

ssCGCCCTCGss

SSCGAGGGCGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1252 (13.07%)
Max nb of predicted sites per peak: 6
(chr12:17881627-17882518)
Mean nb of predicted sites per peak: 1.28

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_mkv5_m5

k-mer sig=12.32; evalue=4.8e-13

wyATTTTTAww

WWTAAAAATRW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 989 (10.32%)
Max nb of predicted sites per peak: 8
(chr3:136748674-136749736)
Mean nb of predicted sites per peak: 1.28

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 positions_7nt_m1

k-mer sig=8.84; evalue=1.4e-09

aaAAAAAAAaa

TTTTTTTTTTT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1323 (13.81%)
Max nb of predicted sites per peak: 30
(chr13:47300465-47300875)
Mean nb of predicted sites per peak: 3.78

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 positions_7nt_m2

k-mer sig=3.64; evalue=0.00023

wwTTTTTAAAAAww

WWTTTTTAAAAAWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 746 (7.79%)
Max nb of predicted sites per peak: 44
(chr19:37298814-37299623)
Mean nb of predicted sites per peak: 3.57

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 positions_7nt_m3

k-mer sig=3.22; evalue=0.0006

rrGAACAATGGmr

YKCCATTGTTCYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1344 (14.03%)
Max nb of predicted sites per peak: 10
(chr1:35115675-35116123)
Mean nb of predicted sites per peak: 1.13

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 positions_7nt_m4

k-mer sig=3.64; evalue=0.00023

wwATTTAAAAaww

WWTTTTTAAATWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1473 (15.38%)
Max nb of predicted sites per peak: 50
(chr19:37298814-37299623)
Mean nb of predicted sites per peak: 1.80

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 positions_7nt_m5

k-mer sig=2.33; evalue=0.0047

waACAATAGaa

TTCTATTGTTW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 777 (8.11%)
Max nb of predicted sites per peak: 5
(chr14:121084758-121084999)
Mean nb of predicted sites per peak: 1.11

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: SOX2 (05/01/2026 14:41)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results