peak-motifs list

Motif discovery

Motif 1 oligos_6nt_mkv2_m1

k-mer sig=0.08; evalue=0.83

yrCCTaCCgm

KCGGTAGGYR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yrCCTaCCgm

7242_MYB55_ArabidopsisPBM_20140210_ 7242_MYB55_ArabidopsisPBM_20140210_ D 10 1.0000 0.881 0.881 NA NA

7236_MYB111_ArabidopsisPBM_20140210_ 7236_MYB111_ArabidopsisPBM_20140210_ R 9 0.8182 0.923 0.755 NA NA

7237_MYB111_2_ArabidopsisPBM_20140210_ 7237_MYB111_2_ArabidopsisPBM_20140210_ R 9 0.8182 0.902 0.738 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 6 (35.29%)
Max nb of predicted sites per peak: 3
(CYP73A5)
Mean nb of predicted sites per peak: 1.67

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_7nt_mkv2_m1

k-mer sig=0.52; evalue=0.3

mytCaCCaasC

GSTTGGTGARK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mytCaCCaasC

7237_MYB111_2_ArabidopsisPBM_20140210_ 7237_MYB111_2_ArabidopsisPBM_20140210_ R 9 0.7500 0.775 0.582 NA NA

7242_MYB55_ArabidopsisPBM_20140210_ 7242_MYB55_ArabidopsisPBM_20140210_ D 8 0.6154 0.759 0.467 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9 (52.94%)
Max nb of predicted sites per peak: 3
(CYP73A5)
Mean nb of predicted sites per peak: 1.56

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_7nt_mkv2_m2

k-mer sig=0.45; evalue=0.35

wsaCCaaCCsC

GSGGTTGGTSW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wsaCCaaCCsC

7242_MYB55_ArabidopsisPBM_20140210_ 7242_MYB55_ArabidopsisPBM_20140210_ D 10 0.9091 0.857 0.779 NA NA

7237_MYB111_2_ArabidopsisPBM_20140210_ 7237_MYB111_2_ArabidopsisPBM_20140210_ R 10 0.9091 0.856 0.778 NA NA

7236_MYB111_ArabidopsisPBM_20140210_ 7236_MYB111_ArabidopsisPBM_20140210_ R 10 0.9091 0.789 0.718 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (58.82%)
Max nb of predicted sites per peak: 3
(PAL2)
Mean nb of predicted sites per peak: 1.80

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_7nt_mkv2_m3

k-mer sig=0.44; evalue=0.36

tyaCCaAaCsc

GSGTTTGGTRA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tyaCCaAaCsc

7238_MYB46_ArabidopsisPBM_20140210_ 7238_MYB46_ArabidopsisPBM_20140210_ R 10 0.9091 0.826 0.750 NA NA

7242_MYB55_ArabidopsisPBM_20140210_ 7242_MYB55_ArabidopsisPBM_20140210_ D 10 0.9091 0.785 0.714 NA NA

7244_MYB59_ArabidopsisPBM_20140210_ 7244_MYB59_ArabidopsisPBM_20140210_ R 10 0.9091 0.777 0.707 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (58.82%)
Max nb of predicted sites per peak: 5
(PAL2)
Mean nb of predicted sites per peak: 1.80

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_7nt_mkv2_m4

k-mer sig=0.14; evalue=0.72

yyaACGGCGkar

YTMCGCCGTTRR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yyaACGGCGkar

7240_MYB52_ArabidopsisPBM_20140210_ 7240_MYB52_ArabidopsisPBM_20140210_ D 8 0.5714 0.831 0.475 NA NA

7218_DOF5.7_2_ArabidopsisPBM_20140210_ 7218_DOF5.7_2_ArabidopsisPBM_20140210_ R 8 0.5714 0.727 0.416 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 7 (41.18%)
Max nb of predicted sites per peak: 5
(CYP73A5)
Mean nb of predicted sites per peak: 1.86

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_8nt_mkv2_m1

k-mer sig=1.50; evalue=0.032

ywaACGSCGTyw

WRACGSCGTTWR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ywaACGSCGTyw

7240_MYB52_ArabidopsisPBM_20140210_ 7240_MYB52_ArabidopsisPBM_20140210_ D 8 0.5714 0.783 0.447 NA NA

7218_DOF5.7_2_ArabidopsisPBM_20140210_ 7218_DOF5.7_2_ArabidopsisPBM_20140210_ R 8 0.5714 0.740 0.423 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 5 (29.41%)
Max nb of predicted sites per peak: 4
(CYP73A5)
Mean nb of predicted sites per peak: 2.40

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_8nt_mkv2_m2

k-mer sig=1.48; evalue=0.033

mttCACCaaCCsCsm

KSGSGGTTGGTGAAK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mttCACCaaCCsCsm

7237_MYB111_2_ArabidopsisPBM_20140210_ 7237_MYB111_2_ArabidopsisPBM_20140210_ R 10 0.6667 0.819 0.546 NA NA

7242_MYB55_ArabidopsisPBM_20140210_ 7242_MYB55_ArabidopsisPBM_20140210_ D 10 0.6667 0.777 0.518 NA NA

7243_MYB55_2_ArabidopsisPBM_20140210_ 7243_MYB55_2_ArabidopsisPBM_20140210_ R 10 0.6667 0.751 0.501 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (58.82%)
Max nb of predicted sites per peak: 4
(CYP73A5)
Mean nb of predicted sites per peak: 1.70

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_8nt_mkv2_m3

k-mer sig=0.82; evalue=0.15

tsaaaaTTTGky

RMCAAATTTTSA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tsaaaaTTTGky

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9 (52.94%)
Max nb of predicted sites per peak: 2
(F6'H1)
Mean nb of predicted sites per peak: 1.33

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 dyads_m1

k-mer sig=2.89; evalue=0.0013

ytCaCCaaCCvc

GBGGTTGGTGAR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ytCaCCaaCCvc

7237_MYB111_2_ArabidopsisPBM_20140210_ 7237_MYB111_2_ArabidopsisPBM_20140210_ R 10 0.8333 0.908 0.756 NA NA

7242_MYB55_ArabidopsisPBM_20140210_ 7242_MYB55_ArabidopsisPBM_20140210_ D 10 0.8333 0.846 0.705 NA NA

7236_MYB111_ArabidopsisPBM_20140210_ 7236_MYB111_ArabidopsisPBM_20140210_ R 10 0.8333 0.818 0.682 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (58.82%)
Max nb of predicted sites per peak: 3
(PAL1)
Mean nb of predicted sites per peak: 1.90

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 dyads_m2

k-mer sig=0.37; evalue=0.43

byaCCymbyCCCry

RYGGGRVKRGGTRV

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor byaCCymbyCCCry

7236_MYB111_ArabidopsisPBM_20140210_ 7236_MYB111_ArabidopsisPBM_20140210_ R 10 0.7143 0.790 0.564 NA NA

7238_MYB46_ArabidopsisPBM_20140210_ 7238_MYB46_ArabidopsisPBM_20140210_ R 10 0.7143 0.757 0.541 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 8 (47.06%)
Max nb of predicted sites per peak: 5
(CYP73A5)
Mean nb of predicted sites per peak: 1.75

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 dyads_m3

k-mer sig=0.19; evalue=0.65

wkGCCraRSykkGGCyt

ARGCCMMRSYTYGGCMW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wkGCCraRSykkGGCyt

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 5 (29.41%)
Max nb of predicted sites per peak: 3
(HST)
Mean nb of predicted sites per peak: 2.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 dyads_m4

k-mer sig=0.17; evalue=0.68

krACCaAACsm

KSGTTTGGTYM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor krACCaAACsm

7238_MYB46_ArabidopsisPBM_20140210_ 7238_MYB46_ArabidopsisPBM_20140210_ R 10 0.9091 0.813 0.739 NA NA

7244_MYB59_ArabidopsisPBM_20140210_ 7244_MYB59_ArabidopsisPBM_20140210_ R 10 0.9091 0.801 0.728 NA NA

7242_MYB55_ArabidopsisPBM_20140210_ 7242_MYB55_ArabidopsisPBM_20140210_ D 10 0.9091 0.747 0.679 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 7 (41.18%)
Max nb of predicted sites per peak: 5
(PAL2)
Mean nb of predicted sites per peak: 1.71

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus ArabidopsisPBM database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: list_up2 (26/02/2026 14:00)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tsaaaaTTTGky

Total matches= 0

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wkGCCraRSykkGGCyt

Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSAT - peak-motifs result

Analysis: list_up2 (26/02/2026 14:00)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

ArabidopsisPBM name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor tsaaaaTTTGky Total matches= 0

ArabidopsisPBM name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wkGCCraRSykkGGCyt Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tsaaaaTTTGky

Total matches= 0

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wkGCCraRSykkGGCyt

Total matches= 0