RSAT - peak-motifs result

Analysis: SMAD2_hela_hg38_SEACR_relaxed (26/02/2026 20:08)

peak-motifs  -v 1 -title SMAD2_hela_hg38_SEACR_relaxed -i $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,dyads,positions,local_words -nmotifs 10 -minol 6 -maxol 8 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v

motif discovery
oligos_6nt_mkv3	oligos_6nt_mkv3_m1 assembly: gaaataaa (sig=5.03; e-value=9.3e-06) RC: tttatttc oligos_6nt_mkv3_m2 assembly: aagcaa (sig=3.47; e-value=0.00034) RC: ttgctt oligos_6nt_mkv3_m3 assembly: aaacaaa (sig=3.39; e-value=0.00041) RC: tttgttt oligos_6nt_mkv3_m4 assembly: acccaggc (sig=2.43; e-value=0.0037) RC: gcctgggt oligos_6nt_mkv3_m5 assembly: aatgtat (sig=1.93; e-value=0.012) RC: atacatt oligos_6nt_mkv3_m6 assembly: cctccc (sig=1.77; e-value=0.017) RC: gggagg oligos_6nt_mkv3_m7 assembly: cactgc (sig=1.45; e-value=0.035) RC: gcagtg oligos_6nt_mkv3_m8 assembly: attcaa (sig=1.29; e-value=0.051) RC: ttgaat oligos_6nt_mkv3_m9 assembly: atacata (sig=0.89; e-value=0.13) RC: tatgtat oligos_6nt_mkv3_m10 assembly: aaagaa (sig=0.46; e-value=0.35) RC: ttcttt	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
local_words_6nt	Not a single significant pattern	[local_words_6nt]
positions_6nt	positions_6nt_m1 assembly: atgtaa (sig=0.17; e-value=0.68) RC: ttacat positions_6nt_m2 : (sig=; e-value=1) RC: positions_6nt_m3 : (sig=; e-value=1) RC: positions_6nt_m4 : (sig=; e-value=1) RC: positions_6nt_m5 : (sig=; e-value=1) RC: positions_6nt_m6 : (sig=; e-value=1) RC: positions_6nt_m7 : (sig=; e-value=1) RC: positions_6nt_m8 : (sig=; e-value=1) RC: positions_6nt_m9 : (sig=; e-value=1) RC: positions_6nt_m10 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
oligos_7nt_mkv4	oligos_7nt_mkv4_m1 assembly: ccactgca (sig=1.40; e-value=0.04) RC: tgcagtgg oligos_7nt_mkv4_m2 assembly: aatgtat (sig=0.21; e-value=0.62) RC: atacatt oligos_7nt_mkv4_m3 assembly: gagtgca (sig=0.03; e-value=0.93) RC: tgcactc oligos_7nt_mkv4_m4 : (sig=; e-value=1) RC: oligos_7nt_mkv4_m5 : (sig=; e-value=1) RC: oligos_7nt_mkv4_m6 : (sig=; e-value=1) RC: oligos_7nt_mkv4_m7 : (sig=; e-value=1) RC: oligos_7nt_mkv4_m8 : (sig=; e-value=1) RC: oligos_7nt_mkv4_m9 : (sig=; e-value=1) RC: oligos_7nt_mkv4_m10 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
local_words_7nt	Not a single significant pattern	[local_words_7nt]
positions_7nt	Not a single significant pattern	[positions_7nt]
oligos_8nt_mkv5	oligos_8nt_mkv5_m1 assembly: cattttac (sig=0.29; e-value=0.51) RC: gtaaaatg oligos_8nt_mkv5_m2 assembly: ggagtgca (sig=0.26; e-value=0.55) RC: tgcactcc oligos_8nt_mkv5_m3 assembly: cactccag (sig=0.09; e-value=0.81) RC: ctggagtg oligos_8nt_mkv5_m4 : (sig=; e-value=1) RC: oligos_8nt_mkv5_m5 : (sig=; e-value=1) RC: oligos_8nt_mkv5_m6 : (sig=; e-value=1) RC: oligos_8nt_mkv5_m7 : (sig=; e-value=1) RC: oligos_8nt_mkv5_m8 : (sig=; e-value=1) RC: oligos_8nt_mkv5_m9 : (sig=; e-value=1) RC: oligos_8nt_mkv5_m10 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
local_words_8nt	Not a single significant pattern	[local_words_8nt]
positions_8nt	Not a single significant pattern	[positions_8nt]
dyads	dyads_m1 assembly: ataaaataat (sig=25.10; e-value=7.9e-26) RC: attattttat dyads_m2 assembly: agaaataa (sig=18.65; e-value=2.2e-19) RC: ttatttct dyads_m3 assembly: acccaggca (sig=15.32; e-value=4.8e-16) RC: tgcctgggt dyads_m4 assembly: ccctcctccccctcccca (sig=14.58; e-value=2.6e-15) RC: tggggagggggaggaggg dyads_m5 assembly: cccacc (sig=14.53; e-value=3e-15) RC: ggtggg dyads_m6 assembly: aatgta (sig=13.28; e-value=5.2e-14) RC: tacatt dyads_m7 assembly: agagaa (sig=12.60; e-value=2.5e-13) RC: ttctct dyads_m8 assembly: aacaaa (sig=12.30; e-value=5e-13) RC: tttgtt dyads_m9 assembly: ccccccagccca (sig=12.05; e-value=8.9e-13) RC: tgggctgggggg dyads_m10 assembly: ataaaataaataa (sig=25.10; e-value=7.9e-26) RC: ttatttattttat	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]

Motif discovery
Motif 1   oligos_6nt_mkv3_m1	k-mer sig=5.03; evalue=9.3e-06 awGAAATAAAww WWTTTATTTCWT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 23 (10.18%) Max nb of predicted sites per peak: 8  (hg38_ct_MyTrack_6202_1) Mean nb of predicted sites per peak: 7.48	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv3_m2	k-mer sig=3.47; evalue=0.00034 wmAAGCAAtd HATTGCTTKW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 14 (6.19%) Max nb of predicted sites per peak: 4  (hg38_ct_MyTrack_6202_5) Mean nb of predicted sites per peak: 5.86	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv3_m3	k-mer sig=3.39; evalue=0.00041 aaaAACAAAma TKTTTGTTTTT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 24 (10.62%) Max nb of predicted sites per peak: 6  (hg38_ct_MyTrack_6202_7) Mean nb of predicted sites per peak: 7.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv3_m4	k-mer sig=2.43; evalue=0.0037 kbrCCCAGGCks SMGCCTGGGYVM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 19 (8.41%) Max nb of predicted sites per peak: 20  (hg38_ct_MyTrack_6202_0) Mean nb of predicted sites per peak: 11.47	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv3_m5	k-mer sig=1.93; evalue=0.012 wwAATGTAtaw WTATACATTWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 19 (8.41%) Max nb of predicted sites per peak: 5  (hg38_ct_MyTrack_6202_9) Mean nb of predicted sites per peak: 6.42	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_6nt_mkv3_m6	k-mer sig=1.77; evalue=0.017 csCCTCCCss SSGGGAGGSG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 19 (8.41%) Max nb of predicted sites per peak: 28  (hg38_ct_MyTrack_6202_0) Mean nb of predicted sites per peak: 12.42	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_6nt_mkv3_m7	k-mer sig=1.45; evalue=0.035 ssCACtGCvs SBGCAGTGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 18 (7.96%) Max nb of predicted sites per peak: 18  (hg38_ct_MyTrack_6202_0) Mean nb of predicted sites per peak: 12.72	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_6nt_mkv3_m8	k-mer sig=1.29; evalue=0.051 dcATTCAAsa TSTTGAATGH	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 20 (8.85%) Max nb of predicted sites per peak: 3  (hg38_ct_MyTrack_6202_3) Mean nb of predicted sites per peak: 3.15	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_6nt_mkv3_m9	k-mer sig=0.89; evalue=0.13 atATACATAta TATATGTATAT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 17 (7.52%) Max nb of predicted sites per peak: 53  (hg38_ct_MyTrack_6202_9) Mean nb of predicted sites per peak: 9.94	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_6nt_mkv3_m10	k-mer sig=0.46; evalue=0.35 aaAAAGAAra TYTTCTTTTT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 17 (7.52%) Max nb of predicted sites per peak: 5  (hg38_ct_MyTrack_6202_5) Mean nb of predicted sites per peak: 6.47	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 11   positions_6nt_m1	k-mer sig=0.17; evalue=0.68 ahATGTAAak MTTTACATDT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 25 (11.06%) Max nb of predicted sites per peak: 6  (hg38_ct_MyTrack_6202_2) Mean nb of predicted sites per peak: 6.16	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 12   oligos_7nt_mkv4_m1	k-mer sig=1.40; evalue=0.04 gsCCACTGCasb VSTGCAGTGGSC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 15 (6.64%) Max nb of predicted sites per peak: 9  (hg38_ct_MyTrack_6202_0) Mean nb of predicted sites per peak: 10.87	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 13   oligos_7nt_mkv4_m2	k-mer sig=0.21; evalue=0.62 wwAATGTATaw WTATACATTWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 19 (8.41%) Max nb of predicted sites per peak: 6  (hg38_ct_MyTrack_6202_9) Mean nb of predicted sites per peak: 6.53	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 14   oligos_7nt_mkv4_m3	k-mer sig=0.03; evalue=0.93 kdGAGTGCAsy RSTGCACTCHM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 17 (7.52%) Max nb of predicted sites per peak: 7  (hg38_ct_MyTrack_6202_0) Mean nb of predicted sites per peak: 4.94	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 15   oligos_8nt_mkv5_m1	k-mer sig=0.29; evalue=0.51 ywCATTTTACww WWGTAAAATGWR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 17 (7.52%) Max nb of predicted sites per peak: 5  (hg38_ct_MyTrack_6202_11) Mean nb of predicted sites per peak: 3.12	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 16   oligos_8nt_mkv5_m2	k-mer sig=0.26; evalue=0.55 ckGGAGTGCAgk MCTGCACTCCMG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 17 (7.52%) Max nb of predicted sites per peak: 16  (hg38_ct_MyTrack_6202_0) Mean nb of predicted sites per peak: 7.06	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 17   oligos_8nt_mkv5_m3	k-mer sig=0.09; evalue=0.81 ysCACTCCAGcc GGCTGGAGTGSR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 20 (8.85%) Max nb of predicted sites per peak: 10  (hg38_ct_MyTrack_6202_0) Mean nb of predicted sites per peak: 8.60	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 18   dyads_m1	k-mer sig=25.10; evalue=7.9e-26 wwaTAAAATAAtww WWATTATTTTATWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 21 (9.29%) Max nb of predicted sites per peak: 10  (hg38_ct_MyTrack_6202_9) Mean nb of predicted sites per peak: 6.24	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 19   dyads_m2	k-mer sig=18.65; evalue=2.2e-19 arAGAAATAAaw WTTTATTTCTYT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 20 (8.85%) Max nb of predicted sites per peak: 5  (hg38_ct_MyTrack_6202_1) Mean nb of predicted sites per peak: 5.45	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 20   dyads_m3	k-mer sig=15.32; evalue=4.8e-16 tyrCCCAGGCwsg CSWGCCTGGGYRA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 22 (9.73%) Max nb of predicted sites per peak: 23  (hg38_ct_MyTrack_6202_0) Mean nb of predicted sites per peak: 9.77	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 21   dyads_m4	k-mer sig=14.58; evalue=2.6e-15 CyCCCkCCtCCsCCtCCCcasb VSTGGGGAGGSGGAGGMGGGRG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 20 (8.85%) Max nb of predicted sites per peak: 32  (hg38_ct_MyTrack_6202_0) Mean nb of predicted sites per peak: 17.05	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 22   dyads_m5	k-mer sig=14.53; evalue=3e-15 ssCCCACCss SSGGTGGGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 18 (7.96%) Max nb of predicted sites per peak: 27  (hg38_ct_MyTrack_6202_0) Mean nb of predicted sites per peak: 11.61	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 23   dyads_m6	k-mer sig=13.28; evalue=5.2e-14 wrAATGTAtr YATACATTYW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 22 (9.73%) Max nb of predicted sites per peak: 7  (hg38_ct_MyTrack_6202_0) Mean nb of predicted sites per peak: 8.36	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 24   dyads_m7	k-mer sig=12.60; evalue=2.5e-13 rsAGAGAArr YYTTCTCTSY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 21 (9.29%) Max nb of predicted sites per peak: 7  (hg38_ct_MyTrack_6202_0) Mean nb of predicted sites per peak: 7.67	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 25   dyads_m8	k-mer sig=12.30; evalue=5e-13 aaAACAAAma TKTTTGTTTT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 27 (11.95%) Max nb of predicted sites per peak: 6  (hg38_ct_MyTrack_6202_7) Mean nb of predicted sites per peak: 5.63	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 26   dyads_m9	k-mer sig=12.05; evalue=8.9e-13 csCCCCCCaGCCCmss SSKGGGCTGGGGGGSG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 20 (8.85%) Max nb of predicted sites per peak: 46  (hg38_ct_MyTrack_6202_0) Mean nb of predicted sites per peak: 13.65	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 27   dyads_m10	k-mer sig=25.10; evalue=7.9e-26 waatAAaAtaaAtAaww WWTTATTTATTTTATTW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 22 (9.73%) Max nb of predicted sites per peak: 19  (hg38_ct_MyTrack_6202_9) Mean nb of predicted sites per peak: 11.64	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title SMAD2_hela_hg38_SEACR_relaxed -i $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,dyads,positions,local_words -nmotifs 10 -minol 6 -maxol 8 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v

Warning: Not a single pattern was found in file tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/positions_8nt/peak-motifs_positions-2str-noov_8nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/local_words_6nt/peak-motifs_local_words-2str-noov_6nt_windgroup50.tab

Warning: Not a single pattern was found in file tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/local_words_7nt/peak-motifs_local_words-2str-noov_7nt_windgroup50.tab

Warning: Not a single pattern was found in file tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/local_words_8nt/peak-motifs_local_words-2str-noov_8nt_windgroup50.tab