RSAT - peak-motifs result

Analysis: aniger (30/03/2026 16:12)

peak-motifs  -v 1 -title aniger -i $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.161110_2026-03-30.161110_KXazJq/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 8 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.161110_2026-03-30.161110_KXazJq

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: aggctaaata (sig=4.09; e-value=8.1e-05) RC: tatttagcct oligos_6nt_mkv2_m2 assembly: agggtc (sig=3.55; e-value=0.00028) RC: gaccct oligos_6nt_mkv2_m3 assembly: acggag (sig=2.03; e-value=0.0093) RC: ctccgt oligos_6nt_mkv2_m4 assembly: cccctc (sig=1.50; e-value=0.032) RC: gagggg oligos_6nt_mkv2_m5 assembly: ctgcag (sig=0.51; e-value=0.31) RC: ctgcag	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: taggctaaat (sig=9.13; e-value=7.4e-10) RC: atttagccta oligos_7nt_mkv2_m2 assembly: agggtcc (sig=1.29; e-value=0.051) RC: ggaccct oligos_7nt_mkv2_m3 assembly: ggataaa (sig=1.06; e-value=0.087) RC: tttatcc oligos_7nt_mkv2_m4 assembly: caggctaaat (sig=9.13; e-value=7.4e-10) RC: atttagcctg oligos_7nt_mkv2_m5 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]
oligos_8nt_mkv2	oligos_8nt_mkv2_m1 assembly: atttagcct (sig=8.34; e-value=4.6e-09) RC: aggctaaat oligos_8nt_mkv2_m2 assembly: tcagggtcc (sig=0.78; e-value=0.17) RC: ggaccctga oligos_8nt_mkv2_m3 assembly: aaaaaaga (sig=0.20; e-value=0.63) RC: tctttttt oligos_8nt_mkv2_m4 assembly: acggagta (sig=0.12; e-value=0.76) RC: tactccgt oligos_8nt_mkv2_m5 assembly: ctacggag (sig=0.08; e-value=0.83) RC: ctccgtag	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_8nt	Not a single significant pattern	[positions_8nt]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=4.09; evalue=8.1e-05 tyaGGCTAAATasy RSTATTTAGCCTRA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 25 (67.57%) Max nb of predicted sites per peak: 3  (pid_4473_-) Mean nb of predicted sites per peak: 1.44	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv2_m2	k-mer sig=3.55; evalue=0.00028 kvAGGGTCyw WRGACCCTBM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 19 (51.35%) Max nb of predicted sites per peak: 4  (pid_8994_+) Mean nb of predicted sites per peak: 1.84	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv2_m3	k-mer sig=2.03; evalue=0.0093 mtACGGAGtr YACTCCGTAK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 18 (48.65%) Max nb of predicted sites per peak: 3  (pid_2929_+) Mean nb of predicted sites per peak: 1.39	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv2_m4	k-mer sig=1.50; evalue=0.032 tmCCCCTCyy RRGAGGGGKA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 15 (40.54%) Max nb of predicted sites per peak: 3  (pid_4034_+) Mean nb of predicted sites per peak: 1.47	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv2_m5	k-mer sig=0.51; evalue=0.31 tyCTGCAGra TYCTGCAGRA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 15 (40.54%) Max nb of predicted sites per peak: 6  (pid_1648_-) Mean nb of predicted sites per peak: 2.73	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv2_m1	k-mer sig=9.13; evalue=7.4e-10 wkyaGGCTAAATys SRATTTAGCCTRMW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 26 (70.27%) Max nb of predicted sites per peak: 3  (pid_1952_-) Mean nb of predicted sites per peak: 1.58	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv2_m2	k-mer sig=1.29; evalue=0.051 kvAGGGTCcrg CYGGACCCTBM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 13 (35.14%) Max nb of predicted sites per peak: 4  (pid_8994_+) Mean nb of predicted sites per peak: 1.85	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv2_m3	k-mer sig=1.06; evalue=0.087 kmGGATAAAtw WATTTATCCKM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 20 (54.05%) Max nb of predicted sites per peak: 3  (pid_8707_-) Mean nb of predicted sites per peak: 1.45	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv2_m4	k-mer sig=9.13; evalue=7.4e-10 wwyaGGCTAAAtyk MRATTTAGCCTRWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 27 (72.97%) Max nb of predicted sites per peak: 3  (pid_2451_+) Mean nb of predicted sites per peak: 1.56	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_8nt_mkv2_m1	k-mer sig=8.34; evalue=4.6e-09 srATTTAGCCtra TYAGGCTAAATYS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 21 (56.76%) Max nb of predicted sites per peak: 3  (pid_1952_-) Mean nb of predicted sites per peak: 1.52	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 11   oligos_8nt_mkv2_m2	k-mer sig=0.78; evalue=0.17 vdtCAGGGTCCAb VTGGACCCTGAHB	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 10 (27.03%) Max nb of predicted sites per peak: 4  (pid_8994_+) Mean nb of predicted sites per peak: 1.80	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 12   oligos_8nt_mkv2_m3	k-mer sig=0.20; evalue=0.63 rrAAAAAAGArs SYTCTTTTTTYY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 21 (56.76%) Max nb of predicted sites per peak: 3  (pid_8994_+) Mean nb of predicted sites per peak: 1.52	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 13   oligos_8nt_mkv2_m4	k-mer sig=0.12; evalue=0.76 rtACGGAGTArw WYTACTCCGTAY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 22 (59.46%) Max nb of predicted sites per peak: 3  (pid_4473_-) Mean nb of predicted sites per peak: 1.27	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 14   oligos_8nt_mkv2_m5	k-mer sig=0.08; evalue=0.83 rdCTACGGAGwa TWCTCCGTAGHY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 15 (40.54%) Max nb of predicted sites per peak: 3  (pid_4473_-) Mean nb of predicted sites per peak: 1.40	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title aniger -i $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.161110_2026-03-30.161110_KXazJq/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 8 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.161110_2026-03-30.161110_KXazJq

Warning: Not a single pattern was found in file tmp/www-data/2026/03/30/peak-motifs.2026-03-30.161110_2026-03-30.161110_KXazJq/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2026/03/30/peak-motifs.2026-03-30.161110_2026-03-30.161110_KXazJq/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2026/03/30/peak-motifs.2026-03-30.161110_2026-03-30.161110_KXazJq/results/positions_8nt/peak-motifs_positions-2str-noov_8nt_ci50.tab