RSAT - peak-motifs result

Analysis: Tree (30/03/2026 16:54)

peak-motifs  -v 1 -title Tree -i $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.165330_2026-03-30.165330_4VVVX9/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.165330_2026-03-30.165330_4VVVX9

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: ttaggctaaat (sig=11.48; e-value=3.3e-12) RC: atttagcctaa oligos_6nt_mkv2_m2 assembly: taccta (sig=4.77; e-value=1.7e-05) RC: taggta oligos_6nt_mkv2_m3 assembly: ctggggaag (sig=2.70; e-value=0.002) RC: cttccccag oligos_6nt_mkv2_m4 assembly: atttagccgc (sig=11.48; e-value=3.3e-12) RC: gcggctaaat oligos_6nt_mkv2_m5 assembly: ggcaaa (sig=0.73; e-value=0.19) RC: tttgcc	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: ttaggctaaat (sig=11.72; e-value=1.9e-12) RC: atttagcctaa oligos_7nt_mkv2_m2 assembly: tctggggaag (sig=3.52; e-value=0.0003) RC: cttccccaga oligos_7nt_mkv2_m3 assembly: attagcctaa (sig=4.12; e-value=7.6e-05) RC: ttaggctaat oligos_7nt_mkv2_m4 assembly: cggctaaat (sig=11.72; e-value=1.9e-12) RC: atttagccg oligos_7nt_mkv2_m5 assembly: ctaggtat (sig=1.67; e-value=0.021) RC: atacctag	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=11.48; evalue=3.3e-12 wwttaGGCTAAAtrv BYATTTAGCCTAAWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1 (2.56%) Max nb of predicted sites per peak: 55  (Trire) Mean nb of predicted sites per peak: 55.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv2_m2	k-mer sig=4.77; evalue=1.7e-05 cmTACCTAsg CSTAGGTAKG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1 (2.56%) Max nb of predicted sites per peak: 41  (Trire) Mean nb of predicted sites per peak: 41.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv2_m3	k-mer sig=2.70; evalue=0.002 ayctGGGGAAGyr YRCTTCCCCAGRT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1 (2.56%) Max nb of predicted sites per peak: 31  (Trire) Mean nb of predicted sites per peak: 31.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv2_m4	k-mer sig=11.48; evalue=3.3e-12 kyaTTTAGCCkchr YDGMGGCTAAATRM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1 (2.56%) Max nb of predicted sites per peak: 41  (Trire) Mean nb of predicted sites per peak: 41.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv2_m5	k-mer sig=0.73; evalue=0.19 haGGCAAAwk MWTTTGCCTD	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1 (2.56%) Max nb of predicted sites per peak: 44  (Trire) Mean nb of predicted sites per peak: 44.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv2_m1	k-mer sig=11.72; evalue=1.9e-12 dwttAGGCTAAAtrv BYATTTAGCCTAAWH	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1 (2.56%) Max nb of predicted sites per peak: 50  (Trire) Mean nb of predicted sites per peak: 50.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv2_m2	k-mer sig=3.52; evalue=0.0003 artcTGGGGAAgcr YGCTTCCCCAGAYT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1 (2.56%) Max nb of predicted sites per peak: 31  (Trire) Mean nb of predicted sites per peak: 31.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv2_m3	k-mer sig=4.12; evalue=7.6e-05 mwwTTAGCCTAAwh DWTTAGGCTAAWWK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1 (2.56%) Max nb of predicted sites per peak: 47  (Trire) Mean nb of predicted sites per peak: 47.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv2_m4	k-mer sig=11.72; evalue=1.9e-12 wmhGGCTAAATrr YYATTTAGCCDKW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1 (2.56%) Max nb of predicted sites per peak: 43  (Trire) Mean nb of predicted sites per peak: 43.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv2_m5	k-mer sig=1.67; evalue=0.021 acCTAGGTAtgy RCATACCTAGGT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1 (2.56%) Max nb of predicted sites per peak: 35  (Trire) Mean nb of predicted sites per peak: 35.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title Tree -i $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.165330_2026-03-30.165330_4VVVX9/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.165330_2026-03-30.165330_4VVVX9

Warning: Not a single pattern was found in file tmp/www-data/2026/03/30/peak-motifs.2026-03-30.165330_2026-03-30.165330_4VVVX9/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2026/03/30/peak-motifs.2026-03-30.165330_2026-03-30.165330_4VVVX9/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab