RSAT - peak-motifs result

Analysis: Peaks1 (09/04/2026 11:46)

peak-motifs  -v 1 -title Peaks1 -i $RSAT/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: tgcaccca (sig=17.81; e-value=1.5e-18) RC: tgggtgca oligos_6nt_mkv2_m2 assembly: acaccca (sig=4.22; e-value=6e-05) RC: tgggtgt oligos_6nt_mkv2_m3 assembly: tacaact (sig=2.79; e-value=0.0016) RC: agttgta oligos_6nt_mkv2_m4 assembly: tgcacccg (sig=17.81; e-value=1.5e-18) RC: cgggtgca oligos_6nt_mkv2_m5 assembly: aagaaag (sig=0.80; e-value=0.16) RC: ctttctt	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: tgggtgcaat (sig=17.89; e-value=1.3e-18) RC: attgcaccca oligos_7nt_mkv2_m2 assembly: ccgggtgcaat (sig=17.89; e-value=1.3e-18) RC: attgcacccgg oligos_7nt_mkv2_m3 assembly: agttgta (sig=2.87; e-value=0.0013) RC: tacaact oligos_7nt_mkv2_m4 assembly: ctgcaccca (sig=17.89; e-value=1.3e-18) RC: tgggtgcag oligos_7nt_mkv2_m5 assembly: aggtgcaat (sig=3.46; e-value=0.00035) RC: attgcacct	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=17.81; evalue=1.5e-18 aytGCACCCasw WSTGGGTGCART	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 50 (43.48%) Max nb of predicted sites per peak: 4  (ChrF_C_glabrata_CBS138_bPeak_2) Mean nb of predicted sites per peak: 1.28	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv2_m2	k-mer sig=4.22; evalue=6e-05 ccaCACCCash DSTGGGTGTGG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 23 (20.00%) Max nb of predicted sites per peak: 3  (ChrL_C_glabrata_CBS138_bPeak_7) Mean nb of predicted sites per peak: 1.17	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv2_m3	k-mer sig=2.79; evalue=0.0016 svtACAaCTvc GBAGTTGTABS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 17 (14.78%) Max nb of predicted sites per peak: 3  (ChrH_C_glabrata_CBS138_bPeak_8) Mean nb of predicted sites per peak: 1.18	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv2_m4	k-mer sig=17.81; evalue=1.5e-18 ayTGCACCCmst ASKGGGTGCART	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 52 (45.22%) Max nb of predicted sites per peak: 4  (ChrF_C_glabrata_CBS138_bPeak_2) Mean nb of predicted sites per peak: 1.27	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv2_m5	k-mer sig=0.80; evalue=0.16 rrAAGAAAGrr YYCTTTCTTYY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 21 (18.26%) Max nb of predicted sites per peak: 3  (ChrL_C_glabrata_CBS138_bPeak_11) Mean nb of predicted sites per peak: 1.24	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv2_m1	k-mer sig=17.89; evalue=1.3e-18 wstGGGTGCArtwk MWAYTGCACCCASW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 46 (40.00%) Max nb of predicted sites per peak: 3  (ChrL_C_glabrata_CBS138_bPeak_7) Mean nb of predicted sites per peak: 1.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv2_m2	k-mer sig=17.89; evalue=1.3e-18 ahssGGGTGCArtws SWAYTGCACCCSSDT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 49 (42.61%) Max nb of predicted sites per peak: 4  (ChrA_C_glabrata_CBS138_bPeak_1) Mean nb of predicted sites per peak: 1.35	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv2_m3	k-mer sig=2.87; evalue=0.0013 kkaGtTGTAbk MVTACAACTMM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 17 (14.78%) Max nb of predicted sites per peak: 3  (ChrH_C_glabrata_CBS138_bPeak_8) Mean nb of predicted sites per peak: 1.18	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv2_m4	k-mer sig=17.89; evalue=1.3e-18 wayTGCACCCasw WSTGGGTGCARTW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 51 (44.35%) Max nb of predicted sites per peak: 3  (ChrL_C_glabrata_CBS138_bPeak_7) Mean nb of predicted sites per peak: 1.25	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv2_m5	k-mer sig=3.46; evalue=0.00035 vbrGGTGCAatta TAATTGCACCYVB	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 42 (36.52%) Max nb of predicted sites per peak: 4  (ChrF_C_glabrata_CBS138_bPeak_2) Mean nb of predicted sites per peak: 1.24	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title Peaks1 -i $RSAT/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r

Warning: Not a single pattern was found in file tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab