RSAT - compare-matrices result

Analysis: result (24/11/2015 14:19)

Status: running...

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Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 MYB59/regulonMYB59.rm.fna.peaks-rm/results/discovered_motifs/peaks_motifs_discovered.tf -format2 transfac -file2 $RSAT/_footprintDB/footprintDB.transfac.plants.motif.tf -mode matches -DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.75 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,logoDP,NIcor,NsEucl,SSD,NSW,match_rank,width,strand,offset,consensus,alignments_1ton -sort Ncor -o MYB59/regulonMYB59.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB.tab

Input files

Type	File
file1	../discovered_motifs/peaks_motifs_discovered.tf
file2	/var/www/html/rsat/_footprintDB/footprintDB.transfac.plants.motif.tf

Output files

Type	File
match_table_txt	peaks_motifs_vs_db_footDB.tab
match_table_html	peaks_motifs_vs_db_footDB.html
alignments_1ton	peaks_motifs_vs_db_footDB_alignments_1ton.tab
alignments_1ton_html	peaks_motifs_vs_db_footDB_alignments_1ton.html

Directories

Type	Directory
output	.
aligned_logos	peaks_motifs_vs_db_footDB_aligned_logos