| Input files | |
|---|---|
| ctrl_seq |
Brachypodium_distachyon.Brachypodium_distachyon_v3.0.46-upstream.rm.fna |
| motif_db_footDB |
/var/www/html/rsat/_footprintDB/footprintDB.transfac.plants.motif.tf |
| test_seq |
W11/regulonW11.rm.fna |
| Directories | |
| output |
W11/regulonW11.rm.fna.peaks-rm/ |
| oligos_5-7nt_m1 |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m1/ |
| oligos_5-7nt_m2 |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m2/ |
| oligos_5-7nt_m3 |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m3/ |
| oligos_5-7nt_m4 |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m4/ |
| dyads_test_vs_ctrl_m1 |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m1/ |
| dyads_test_vs_ctrl_m2 |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m2/ |
| dyads_test_vs_ctrl_m3 |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m3/ |
| Output files | |
| 1nt_ctrl_freq |
W11/regulonW11.rm.fna.peaks-rm/results/composition/peaks_ctrl_freq-1str-ovlp_1nt.tab |
| 1nt_ctrl_heatmap |
W11/regulonW11.rm.fna.peaks-rm/results/composition/peaks_ctrl_heatmap-1str-ovlp_1nt.png |
| 1nt_ctrl_inclusive |
W11/regulonW11.rm.fna.peaks-rm/results/composition/peaks_ctrl_inclusive-1str-ovlp_1nt.txt |
| 1nt_ctrl_profiles |
W11/regulonW11.rm.fna.peaks-rm/results/composition/peaks_ctrl_profiles-1str-ovlp_1nt_ci20.tab |
| 1nt_ctrl_profiles_graph |
W11/regulonW11.rm.fna.peaks-rm/results/composition/peaks_ctrl_profiles-1str-ovlp_1nt_ci20.png |
| 1nt_ctrl_profiles_index |
W11/regulonW11.rm.fna.peaks-rm/results/composition/peaks_ctrl_profiles-1str-ovlp_1nt_ci20_graph_index.html |
| 1nt_ctrl_transitions |
W11/regulonW11.rm.fna.peaks-rm/results/composition/peaks_ctrl_transitions-1str-ovlp_1nt.tab |
| 1nt_test_freq |
W11/regulonW11.rm.fna.peaks-rm/results/composition/peaks_test_freq-1str-ovlp_1nt.tab |
| 1nt_test_heatmap |
W11/regulonW11.rm.fna.peaks-rm/results/composition/peaks_test_heatmap-1str-ovlp_1nt.png |
| 1nt_test_inclusive |
W11/regulonW11.rm.fna.peaks-rm/results/composition/peaks_test_inclusive-1str-ovlp_1nt.txt |
| 1nt_test_profiles |
W11/regulonW11.rm.fna.peaks-rm/results/composition/peaks_test_profiles-1str-ovlp_1nt_ci20.tab |
| 1nt_test_profiles_graph |
W11/regulonW11.rm.fna.peaks-rm/results/composition/peaks_test_profiles-1str-ovlp_1nt_ci20.png |
| 1nt_test_profiles_index |
W11/regulonW11.rm.fna.peaks-rm/results/composition/peaks_test_profiles-1str-ovlp_1nt_ci20_graph_index.html |
| 1nt_test_transitions |
W11/regulonW11.rm.fna.peaks-rm/results/composition/peaks_test_transitions-1str-ovlp_1nt.tab |
| 2nt_ctrl_freq |
W11/regulonW11.rm.fna.peaks-rm/results/composition/peaks_ctrl_freq-1str-ovlp_2nt.tab |
| 2nt_ctrl_heatmap |
W11/regulonW11.rm.fna.peaks-rm/results/composition/peaks_ctrl_heatmap-1str-ovlp_2nt.png |
| 2nt_ctrl_inclusive |
W11/regulonW11.rm.fna.peaks-rm/results/composition/peaks_ctrl_inclusive-1str-ovlp_2nt.txt |
| 2nt_ctrl_profiles |
W11/regulonW11.rm.fna.peaks-rm/results/composition/peaks_ctrl_profiles-1str-ovlp_2nt_ci20.tab |
| 2nt_ctrl_profiles_graph |
W11/regulonW11.rm.fna.peaks-rm/results/composition/peaks_ctrl_profiles-1str-ovlp_2nt_ci20.png |
| 2nt_ctrl_profiles_index |
W11/regulonW11.rm.fna.peaks-rm/results/composition/peaks_ctrl_profiles-1str-ovlp_2nt_ci20_graph_index.html |
| 2nt_ctrl_transitions |
W11/regulonW11.rm.fna.peaks-rm/results/composition/peaks_ctrl_transitions-1str-ovlp_2nt.tab |
| 2nt_test_freq |
W11/regulonW11.rm.fna.peaks-rm/results/composition/peaks_test_freq-1str-ovlp_2nt.tab |
| 2nt_test_heatmap |
W11/regulonW11.rm.fna.peaks-rm/results/composition/peaks_test_heatmap-1str-ovlp_2nt.png |
| 2nt_test_inclusive |
W11/regulonW11.rm.fna.peaks-rm/results/composition/peaks_test_inclusive-1str-ovlp_2nt.txt |
| 2nt_test_profiles |
W11/regulonW11.rm.fna.peaks-rm/results/composition/peaks_test_profiles-1str-ovlp_2nt_ci20.tab |
| 2nt_test_profiles_graph |
W11/regulonW11.rm.fna.peaks-rm/results/composition/peaks_test_profiles-1str-ovlp_2nt_ci20.png |
| 2nt_test_profiles_index |
W11/regulonW11.rm.fna.peaks-rm/results/composition/peaks_test_profiles-1str-ovlp_2nt_ci20_graph_index.html |
| 2nt_test_transitions |
W11/regulonW11.rm.fna.peaks-rm/results/composition/peaks_test_transitions-1str-ovlp_2nt.tab |
| archive |
W11/regulonW11.rm.fna.peaks-rm/peaks_archive.zip |
| ctrl_converted |
W11/regulonW11.rm.fna.peaks-rm/data/sequences/peaks_ctrl.fasta |
| ctrl_purged |
W11/regulonW11.rm.fna.peaks-rm/data/sequences/peaks_ctrl_purged_ml40_mis3.fasta |
| ctrl_seqlen |
W11/regulonW11.rm.fna.peaks-rm/data/sequences/peaks_ctrl_seqlen.tab |
| ctrl_seqlen_distrib |
W11/regulonW11.rm.fna.peaks-rm/data/sequences/peaks_ctrl_seqlen_distrib.tab |
| ctrl_seqlen_distrib_graph |
W11/regulonW11.rm.fna.peaks-rm/data/sequences/peaks_ctrl_seqlen_distrib.png |
| dyads_test_vs_ctrl |
W11/regulonW11.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads.tab |
| dyads_test_vs_ctrl_2pssm |
W11/regulonW11.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_log.txt |
| dyads_test_vs_ctrl_asmb |
W11/regulonW11.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm.asmb |
| dyads_test_vs_ctrl_bg_file |
W11/regulonW11.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads_bg_from_ctrl-2str-noov_3nt_sp0-20_bg_monads.tab |
| dyads_test_vs_ctrl_m1_logo |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m1/peaks_dyads_test_vs_ctrl_m1_logo.png |
| dyads_test_vs_ctrl_m1_logo_rc |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m1/peaks_dyads_test_vs_ctrl_m1_logo_rc.png |
| dyads_test_vs_ctrl_m1_pssm_enrichment |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m1/peaks_dyads_test_vs_ctrl_m1_scan_mkv1_enrichment.tab |
| dyads_test_vs_ctrl_m1_pssm_enrichment_png |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m1/peaks_dyads_test_vs_ctrl_m1_scan_mkv1_enrichment.png |
| dyads_test_vs_ctrl_m1_pssm_site_distrib |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m1/peaks_dyads_test_vs_ctrl_m1_site_distrib.tab |
| dyads_test_vs_ctrl_m1_pssm_site_distrib_graph |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m1/peaks_dyads_test_vs_ctrl_m1_site_distrib.png |
| dyads_test_vs_ctrl_m1_pssm_sites |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m1/peaks_dyads_test_vs_ctrl_m1_sites.tab |
| dyads_test_vs_ctrl_m1_pssm_sites_per_peak |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m1/peaks_dyads_test_vs_ctrl_m1_sites_per_peak.tab |
| dyads_test_vs_ctrl_m1_pssm_sites_per_peak_graph |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m1/peaks_dyads_test_vs_ctrl_m1_sites_per_peak.png |
| dyads_test_vs_ctrl_m1_tab |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m1/peaks_dyads_test_vs_ctrl_m1.tab |
| dyads_test_vs_ctrl_m1_tf |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m1/peaks_dyads_test_vs_ctrl_m1.tf |
| dyads_test_vs_ctrl_m1_vs_db_footDB |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m1/peaks_dyads_test_vs_ctrl_m1_vs_db_footDB.tab |
| dyads_test_vs_ctrl_m1_vs_db_footDB_html |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m1/peaks_dyads_test_vs_ctrl_m1_vs_db_footDB.html |
| dyads_test_vs_ctrl_m1_vs_ref |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m1/peaks_dyads_test_vs_ctrl_m1_vs_ref.tab |
| dyads_test_vs_ctrl_m1_vs_ref_html |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m1/peaks_dyads_test_vs_ctrl_m1_vs_ref.html |
| dyads_test_vs_ctrl_m2_logo |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m2/peaks_dyads_test_vs_ctrl_m2_logo.png |
| dyads_test_vs_ctrl_m2_logo_rc |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m2/peaks_dyads_test_vs_ctrl_m2_logo_rc.png |
| dyads_test_vs_ctrl_m2_pssm_enrichment |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m2/peaks_dyads_test_vs_ctrl_m2_scan_mkv1_enrichment.tab |
| dyads_test_vs_ctrl_m2_pssm_enrichment_png |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m2/peaks_dyads_test_vs_ctrl_m2_scan_mkv1_enrichment.png |
| dyads_test_vs_ctrl_m2_pssm_site_distrib |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m2/peaks_dyads_test_vs_ctrl_m2_site_distrib.tab |
| dyads_test_vs_ctrl_m2_pssm_site_distrib_graph |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m2/peaks_dyads_test_vs_ctrl_m2_site_distrib.png |
| dyads_test_vs_ctrl_m2_pssm_sites |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m2/peaks_dyads_test_vs_ctrl_m2_sites.tab |
| dyads_test_vs_ctrl_m2_pssm_sites_per_peak |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m2/peaks_dyads_test_vs_ctrl_m2_sites_per_peak.tab |
| dyads_test_vs_ctrl_m2_pssm_sites_per_peak_graph |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m2/peaks_dyads_test_vs_ctrl_m2_sites_per_peak.png |
| dyads_test_vs_ctrl_m2_tab |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m2/peaks_dyads_test_vs_ctrl_m2.tab |
| dyads_test_vs_ctrl_m2_tf |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m2/peaks_dyads_test_vs_ctrl_m2.tf |
| dyads_test_vs_ctrl_m2_vs_db_footDB |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m2/peaks_dyads_test_vs_ctrl_m2_vs_db_footDB.tab |
| dyads_test_vs_ctrl_m2_vs_db_footDB_html |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m2/peaks_dyads_test_vs_ctrl_m2_vs_db_footDB.html |
| dyads_test_vs_ctrl_m2_vs_ref |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m2/peaks_dyads_test_vs_ctrl_m2_vs_ref.tab |
| dyads_test_vs_ctrl_m2_vs_ref_html |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m2/peaks_dyads_test_vs_ctrl_m2_vs_ref.html |
| dyads_test_vs_ctrl_m3_logo |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m3/peaks_dyads_test_vs_ctrl_m3_logo.png |
| dyads_test_vs_ctrl_m3_logo_rc |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m3/peaks_dyads_test_vs_ctrl_m3_logo_rc.png |
| dyads_test_vs_ctrl_m3_pssm_enrichment |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m3/peaks_dyads_test_vs_ctrl_m3_scan_mkv1_enrichment.tab |
| dyads_test_vs_ctrl_m3_pssm_enrichment_png |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m3/peaks_dyads_test_vs_ctrl_m3_scan_mkv1_enrichment.png |
| dyads_test_vs_ctrl_m3_pssm_site_distrib |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m3/peaks_dyads_test_vs_ctrl_m3_site_distrib.tab |
| dyads_test_vs_ctrl_m3_pssm_site_distrib_graph |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m3/peaks_dyads_test_vs_ctrl_m3_site_distrib.png |
| dyads_test_vs_ctrl_m3_pssm_sites |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m3/peaks_dyads_test_vs_ctrl_m3_sites.tab |
| dyads_test_vs_ctrl_m3_pssm_sites_per_peak |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m3/peaks_dyads_test_vs_ctrl_m3_sites_per_peak.tab |
| dyads_test_vs_ctrl_m3_pssm_sites_per_peak_graph |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m3/peaks_dyads_test_vs_ctrl_m3_sites_per_peak.png |
| dyads_test_vs_ctrl_m3_tab |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m3/peaks_dyads_test_vs_ctrl_m3.tab |
| dyads_test_vs_ctrl_m3_tf |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m3/peaks_dyads_test_vs_ctrl_m3.tf |
| dyads_test_vs_ctrl_m3_vs_db_footDB |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m3/peaks_dyads_test_vs_ctrl_m3_vs_db_footDB.tab |
| dyads_test_vs_ctrl_m3_vs_db_footDB_html |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m3/peaks_dyads_test_vs_ctrl_m3_vs_db_footDB.html |
| dyads_test_vs_ctrl_m3_vs_ref |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m3/peaks_dyads_test_vs_ctrl_m3_vs_ref.tab |
| dyads_test_vs_ctrl_m3_vs_ref_html |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/dyads_test_vs_ctrl_m3/peaks_dyads_test_vs_ctrl_m3_vs_ref.html |
| dyads_test_vs_ctrl_pssm_counts |
W11/regulonW11.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.txt |
| dyads_test_vs_ctrl_pssm_logo1 |
W11/regulonW11.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m1.png |
| dyads_test_vs_ctrl_pssm_logo2 |
W11/regulonW11.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m2.png |
| dyads_test_vs_ctrl_pssm_logo3 |
W11/regulonW11.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m3.png |
| dyads_test_vs_ctrl_pssm_logo4 |
W11/regulonW11.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m4.png |
| dyads_test_vs_ctrl_pssm_logo5 |
W11/regulonW11.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m5.png |
| dyads_test_vs_ctrl_pssm_logo_rc1 |
W11/regulonW11.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m1_rc.png |
| dyads_test_vs_ctrl_pssm_logo_rc2 |
W11/regulonW11.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m2_rc.png |
| dyads_test_vs_ctrl_pssm_logo_rc3 |
W11/regulonW11.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m3_rc.png |
| dyads_test_vs_ctrl_pssm_logo_rc4 |
W11/regulonW11.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m4_rc.png |
| dyads_test_vs_ctrl_pssm_logo_rc5 |
W11/regulonW11.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m5_rc.png |
| dyads_test_vs_ctrl_pssm_sig |
W11/regulonW11.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_sig_matrices.tf |
| dyads_test_vs_ctrl_pssm_tf |
W11/regulonW11.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf |
| links |
W11/regulonW11.rm.fna.peaks-rm/reports/peaks_links.html |
| log |
W11/regulonW11.rm.fna.peaks-rm/reports/peaks_log.txt |
| merged_sites |
W11/regulonW11.rm.fna.peaks-rm/results/sites/peaks_all_motifs_seqcoord.tab |
| merged_sites_bed |
W11/regulonW11.rm.fna.peaks-rm/results/sites/peaks_all_motifs_seqcoord.bed |
| merged_words |
W11/regulonW11.rm.fna.peaks-rm/results/merged_words/peaks_merged_words.tab |
| merged_words_heatmap |
W11/regulonW11.rm.fna.peaks-rm/results/merged_words/peaks_merged_words_heatmap.png |
| merged_words_html |
W11/regulonW11.rm.fna.peaks-rm/results/merged_words/peaks_merged_words.html |
| motifs_disco_clusters |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/peaks_motifs_discovered_clusters |
| motifs_disco_clusters_html |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/peaks_motifs_discovered_clusters_SUMMARY.html |
| motifs_disco_compa |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/peaks_motifs_disco_compa.tab |
| motifs_disco_compa_alignments_1ton |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/peaks_motifs_disco_compa_alignments_1ton.tab |
| motifs_disco_compa_alignments_1ton_html |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/peaks_motifs_disco_compa_alignments_1ton.html |
| motifs_disco_compa_gml |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/peaks_motifs_disco_compa.gml |
| motifs_disco_compa_html |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/peaks_motifs_disco_compa.html |
| motifs_discovered |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/peaks_motifs_discovered.tf |
| motifs_discovered_table |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/peaks_motifs_discovered_table.tab |
| motifs_vs_db_footDB |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB.tab |
| motifs_vs_db_footDB_alignments_1ton |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB_alignments_1ton.tab |
| motifs_vs_db_footDB_alignments_1ton_html |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB_alignments_1ton.html |
| motifs_vs_db_footDB_gml |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB.gml |
| motifs_vs_db_footDB_html |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB.html |
| oligos_5-7nt |
W11/regulonW11.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2.tab |
| oligos_5-7nt_2pssm |
W11/regulonW11.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_log.txt |
| oligos_5-7nt_asmb |
W11/regulonW11.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm.asmb |
| oligos_5-7nt_m1_logo |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m1/peaks_oligos_5-7nt_m1_logo.png |
| oligos_5-7nt_m1_logo_rc |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m1/peaks_oligos_5-7nt_m1_logo_rc.png |
| oligos_5-7nt_m1_pssm_enrichment |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m1/peaks_oligos_5-7nt_m1_scan_mkv1_enrichment.tab |
| oligos_5-7nt_m1_pssm_enrichment_png |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m1/peaks_oligos_5-7nt_m1_scan_mkv1_enrichment.png |
| oligos_5-7nt_m1_pssm_site_distrib |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m1/peaks_oligos_5-7nt_m1_site_distrib.tab |
| oligos_5-7nt_m1_pssm_site_distrib_graph |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m1/peaks_oligos_5-7nt_m1_site_distrib.png |
| oligos_5-7nt_m1_pssm_sites |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m1/peaks_oligos_5-7nt_m1_sites.tab |
| oligos_5-7nt_m1_pssm_sites_per_peak |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m1/peaks_oligos_5-7nt_m1_sites_per_peak.tab |
| oligos_5-7nt_m1_pssm_sites_per_peak_graph |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m1/peaks_oligos_5-7nt_m1_sites_per_peak.png |
| oligos_5-7nt_m1_tab |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m1/peaks_oligos_5-7nt_m1.tab |
| oligos_5-7nt_m1_tf |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m1/peaks_oligos_5-7nt_m1.tf |
| oligos_5-7nt_m1_vs_db_footDB |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m1/peaks_oligos_5-7nt_m1_vs_db_footDB.tab |
| oligos_5-7nt_m1_vs_db_footDB_html |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m1/peaks_oligos_5-7nt_m1_vs_db_footDB.html |
| oligos_5-7nt_m1_vs_ref |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m1/peaks_oligos_5-7nt_m1_vs_ref.tab |
| oligos_5-7nt_m1_vs_ref_html |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m1/peaks_oligos_5-7nt_m1_vs_ref.html |
| oligos_5-7nt_m2_logo |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m2/peaks_oligos_5-7nt_m2_logo.png |
| oligos_5-7nt_m2_logo_rc |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m2/peaks_oligos_5-7nt_m2_logo_rc.png |
| oligos_5-7nt_m2_pssm_enrichment |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m2/peaks_oligos_5-7nt_m2_scan_mkv1_enrichment.tab |
| oligos_5-7nt_m2_pssm_enrichment_png |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m2/peaks_oligos_5-7nt_m2_scan_mkv1_enrichment.png |
| oligos_5-7nt_m2_pssm_site_distrib |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m2/peaks_oligos_5-7nt_m2_site_distrib.tab |
| oligos_5-7nt_m2_pssm_site_distrib_graph |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m2/peaks_oligos_5-7nt_m2_site_distrib.png |
| oligos_5-7nt_m2_pssm_sites |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m2/peaks_oligos_5-7nt_m2_sites.tab |
| oligos_5-7nt_m2_pssm_sites_per_peak |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m2/peaks_oligos_5-7nt_m2_sites_per_peak.tab |
| oligos_5-7nt_m2_pssm_sites_per_peak_graph |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m2/peaks_oligos_5-7nt_m2_sites_per_peak.png |
| oligos_5-7nt_m2_tab |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m2/peaks_oligos_5-7nt_m2.tab |
| oligos_5-7nt_m2_tf |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m2/peaks_oligos_5-7nt_m2.tf |
| oligos_5-7nt_m2_vs_db_footDB |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m2/peaks_oligos_5-7nt_m2_vs_db_footDB.tab |
| oligos_5-7nt_m2_vs_db_footDB_html |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m2/peaks_oligos_5-7nt_m2_vs_db_footDB.html |
| oligos_5-7nt_m2_vs_ref |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m2/peaks_oligos_5-7nt_m2_vs_ref.tab |
| oligos_5-7nt_m2_vs_ref_html |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m2/peaks_oligos_5-7nt_m2_vs_ref.html |
| oligos_5-7nt_m3_logo |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m3/peaks_oligos_5-7nt_m3_logo.png |
| oligos_5-7nt_m3_logo_rc |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m3/peaks_oligos_5-7nt_m3_logo_rc.png |
| oligos_5-7nt_m3_pssm_enrichment |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m3/peaks_oligos_5-7nt_m3_scan_mkv1_enrichment.tab |
| oligos_5-7nt_m3_pssm_enrichment_png |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m3/peaks_oligos_5-7nt_m3_scan_mkv1_enrichment.png |
| oligos_5-7nt_m3_pssm_site_distrib |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m3/peaks_oligos_5-7nt_m3_site_distrib.tab |
| oligos_5-7nt_m3_pssm_site_distrib_graph |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m3/peaks_oligos_5-7nt_m3_site_distrib.png |
| oligos_5-7nt_m3_pssm_sites |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m3/peaks_oligos_5-7nt_m3_sites.tab |
| oligos_5-7nt_m3_pssm_sites_per_peak |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m3/peaks_oligos_5-7nt_m3_sites_per_peak.tab |
| oligos_5-7nt_m3_pssm_sites_per_peak_graph |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m3/peaks_oligos_5-7nt_m3_sites_per_peak.png |
| oligos_5-7nt_m3_tab |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m3/peaks_oligos_5-7nt_m3.tab |
| oligos_5-7nt_m3_tf |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m3/peaks_oligos_5-7nt_m3.tf |
| oligos_5-7nt_m3_vs_db_footDB |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m3/peaks_oligos_5-7nt_m3_vs_db_footDB.tab |
| oligos_5-7nt_m3_vs_db_footDB_html |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m3/peaks_oligos_5-7nt_m3_vs_db_footDB.html |
| oligos_5-7nt_m3_vs_ref |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m3/peaks_oligos_5-7nt_m3_vs_ref.tab |
| oligos_5-7nt_m3_vs_ref_html |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m3/peaks_oligos_5-7nt_m3_vs_ref.html |
| oligos_5-7nt_m4_logo |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m4/peaks_oligos_5-7nt_m4_logo.png |
| oligos_5-7nt_m4_logo_rc |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m4/peaks_oligos_5-7nt_m4_logo_rc.png |
| oligos_5-7nt_m4_pssm_enrichment |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m4/peaks_oligos_5-7nt_m4_scan_mkv1_enrichment.tab |
| oligos_5-7nt_m4_pssm_enrichment_png |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m4/peaks_oligos_5-7nt_m4_scan_mkv1_enrichment.png |
| oligos_5-7nt_m4_pssm_site_distrib |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m4/peaks_oligos_5-7nt_m4_site_distrib.tab |
| oligos_5-7nt_m4_pssm_site_distrib_graph |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m4/peaks_oligos_5-7nt_m4_site_distrib.png |
| oligos_5-7nt_m4_pssm_sites |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m4/peaks_oligos_5-7nt_m4_sites.tab |
| oligos_5-7nt_m4_pssm_sites_per_peak |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m4/peaks_oligos_5-7nt_m4_sites_per_peak.tab |
| oligos_5-7nt_m4_pssm_sites_per_peak_graph |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m4/peaks_oligos_5-7nt_m4_sites_per_peak.png |
| oligos_5-7nt_m4_tab |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m4/peaks_oligos_5-7nt_m4.tab |
| oligos_5-7nt_m4_tf |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m4/peaks_oligos_5-7nt_m4.tf |
| oligos_5-7nt_m4_vs_db_footDB |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m4/peaks_oligos_5-7nt_m4_vs_db_footDB.tab |
| oligos_5-7nt_m4_vs_db_footDB_html |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m4/peaks_oligos_5-7nt_m4_vs_db_footDB.html |
| oligos_5-7nt_m4_vs_ref |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m4/peaks_oligos_5-7nt_m4_vs_ref.tab |
| oligos_5-7nt_m4_vs_ref_html |
W11/regulonW11.rm.fna.peaks-rm/results/discovered_motifs/oligos_5-7nt_m4/peaks_oligos_5-7nt_m4_vs_ref.html |
| oligos_5-7nt_pssm_counts |
W11/regulonW11.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.txt |
| oligos_5-7nt_pssm_logo1 |
W11/regulonW11.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices_logo_m1.png |
| oligos_5-7nt_pssm_logo2 |
W11/regulonW11.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices_logo_m2.png |
| oligos_5-7nt_pssm_logo3 |
W11/regulonW11.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices_logo_m3.png |
| oligos_5-7nt_pssm_logo4 |
W11/regulonW11.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices_logo_m4.png |
| oligos_5-7nt_pssm_logo5 |
W11/regulonW11.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices_logo_m5.png |
| oligos_5-7nt_pssm_logo_rc1 |
W11/regulonW11.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices_logo_m1_rc.png |
| oligos_5-7nt_pssm_logo_rc2 |
W11/regulonW11.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices_logo_m2_rc.png |
| oligos_5-7nt_pssm_logo_rc3 |
W11/regulonW11.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices_logo_m3_rc.png |
| oligos_5-7nt_pssm_logo_rc4 |
W11/regulonW11.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices_logo_m4_rc.png |
| oligos_5-7nt_pssm_logo_rc5 |
W11/regulonW11.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices_logo_m5_rc.png |
| oligos_5-7nt_pssm_sig |
W11/regulonW11.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_sig_matrices.tf |
| oligos_5-7nt_pssm_tf |
W11/regulonW11.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.tf |
| oligos_5nt_test_vs_ctrl |
W11/regulonW11.rm.fna.peaks-rm/results/oligos_5nt_test_vs_ctrl/peaks_oligos-2str-noov_5nt_test_vs_ctrl.tab |
| oligos_5nt_test_vs_ctrl_bg_file |
W11/regulonW11.rm.fna.peaks-rm/results/oligos_5nt_test_vs_ctrl/peaks_oligos_bg_from_ctrl_5nt-2str-noov.tab |
| oligos_6nt_test_vs_ctrl |
W11/regulonW11.rm.fna.peaks-rm/results/oligos_6nt_test_vs_ctrl/peaks_oligos-2str-noov_6nt_test_vs_ctrl.tab |
| oligos_6nt_test_vs_ctrl_bg_file |
W11/regulonW11.rm.fna.peaks-rm/results/oligos_6nt_test_vs_ctrl/peaks_oligos_bg_from_ctrl_6nt-2str-noov.tab |
| oligos_7nt_test_vs_ctrl |
W11/regulonW11.rm.fna.peaks-rm/results/oligos_7nt_test_vs_ctrl/peaks_oligos-2str-noov_7nt_test_vs_ctrl.tab |
| oligos_7nt_test_vs_ctrl_bg_file |
W11/regulonW11.rm.fna.peaks-rm/results/oligos_7nt_test_vs_ctrl/peaks_oligos_bg_from_ctrl_7nt-2str-noov.tab |
| small_summary |
W11/regulonW11.rm.fna.peaks-rm/peaks_small_summary.html |
| small_summary_txt |
W11/regulonW11.rm.fna.peaks-rm/reports/peaks_small_summary.txt |
| synthesis |
W11/regulonW11.rm.fna.peaks-rm/peaks_synthesis.html |
| test_converted |
W11/regulonW11.rm.fna.peaks-rm/data/sequences/peaks_test.fasta |
| test_purged |
W11/regulonW11.rm.fna.peaks-rm/data/sequences/peaks_test_purged_ml40_mis3.fasta |
| test_seqlen |
W11/regulonW11.rm.fna.peaks-rm/data/sequences/peaks_test_seqlen.tab |
| test_seqlen_distrib |
W11/regulonW11.rm.fna.peaks-rm/data/sequences/peaks_test_seqlen_distrib.tab |
| test_seqlen_distrib_graph |
W11/regulonW11.rm.fna.peaks-rm/data/sequences/peaks_test_seqlen_distrib.png |
| timelog |
W11/regulonW11.rm.fna.peaks-rm/reports/peaks_timelog.txt |
| timelog_html |
W11/regulonW11.rm.fna.peaks-rm/reports/peaks_timelog.html |
| timetable |
W11/regulonW11.rm.fna.peaks-rm/reports/peaks_timetable.txt |
